RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PIM3Q86V86 326 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PGBD5Q8N414 524 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SLC44A3Q8N4M1 653 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 C19orf60Q96EN9 201 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TOE1Q96GM8 510 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 RTKNQ9BST9 563 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TRPV4Q9HBA0 871 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TREX1Q9NSU2 369 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PNPOQ9NVS9 261 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LEF1Q9UJU2 399 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF646O15015 1829 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 A8MT66 165 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SCAMP1O15126 338 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TRIM24O15164 1050 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ENSAO43768 121 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FKBP9O95302 570 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 COX4I1P13073 169 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FOXN2P32314 431 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FBXW4P57775 412 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ABATP80404 500 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 IRF9Q00978 393 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ANXA8L1Q5VT79 327 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 AGTRAPQ6RW13 159 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MACC1Q6ZN28 852 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FKBP9P1Q75LS8 142 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 GALNT7Q86SF2 657 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SNX32Q86XE0 403 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 GPR156Q8NFN8 814 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MAPK15Q8TD08 544 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TWIST2Q8WVJ9 160 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LPGAT1Q92604 370 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FGF14Q92915 247 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 VPS33AQ96AX1 596 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MTERF3Q96E29 417 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 GTPBP2Q9BX10 602 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TBC1D17Q9HA65 648 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TDRD15B5MCY1 1934 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CDC7O00311 574 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MUSKO15146 869 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MGAMO43451 1857 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 OR1I1O60431 355 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 SNRPB2P08579 225 aaKnown RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 LINC00032P0C843 101 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 JUNDP17535 347 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 FDXRP22570 491 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 HRH2P25021 359 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 RXRGP48443 463 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 LRP8Q14114 963 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 LSM12Q3MHD2 195 aaKnown RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 LRRC74BQ6ZQY2 392 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 GPR180Q86V85 440 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MDGA1Q8NFP4 955 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 CCDC74BQ96LY2 380 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 SLC29A3Q9BZD2 475 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 EURLQ9NYK6 297 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 APOBEC3BQ9UH17 382 aaKnown RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 KRT87PA6NCN2 255 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 IQCF5A8MTL0 148 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 ZSCAN9O15535 394 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 OR1F1O43749 312 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 VNN2O95498 520 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 PRPS2P11908 318 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MYCLP1P12525 358 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 YPEL5P62699 121 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 CHRNB3Q05901 458 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 SNAP47Q5SQN1 464 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 SCIMPQ6UWF3 145 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 UNC5DQ6UXZ4 953 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF574Q6ZN55 896 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 HSD11B1LQ7Z5J1 315 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 GJD3Q8N144 294 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 C2orf73Q8N5S3 287 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 GPR26Q8NDV2 337 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 SUN3Q8TAQ9 357 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 APOOQ9BUR5 198 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 KLHL25Q9H0H3 589 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 ARMC7Q9H6L4 198 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 ARMCX1Q9P291 453 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 TRPC4Q9UBN4 977 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 FBXO9Q9UK97 447 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 PNMA8BQ9ULN7 279 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MTF2Q9Y483 593 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 PCDHB11Q9Y5F2 797 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 OR4F21O95013 312 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 RPL10P27635 214 aaKnown RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 EPHA3P29320 983 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 WDR4P57081 412 aaKnown RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 TGFBIQ15582 683 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 MAPKAPK3Q16644 382 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 GSTA3Q16772 222 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 ADIPOR2Q86V24 386 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 DEFB119Q8N690 84 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 LENG8Q96PV6 779 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 CDX2Q99626 313 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-211ENST00000413186 RHBGQ9H310 441 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 PDFQ9HBH1 243 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 KRT84Q9NSB2 600 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 GPR34Q9UPC5 381 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 TET1Q8NFU7 2136 aa8.31□□□□□ -1.08
SYNE1-211ENST00000413186 PLK4O00444 970 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms