RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TBC1D21Q8IYX1 336 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 PATE1Q8WXA2 126 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SKA1Q96BD8 255 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CXorf40BQ96DE9 158 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CATSPER2Q96P56 530 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TUBB1Q9H4B7 451 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 STN1Q9H668 368 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 TM9SF3Q9HD45 589 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CCDC177Q9NQR7 707 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 FARSBQ9NSD9 589 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 APOBEC3BQ9UH17 382 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 KCNE2Q9Y6J6 123 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CACNA1EQ15878 2313 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TMEM221A6NGB7 291 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 E7EQ34 232 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 M0R296 226 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TLR4O00206 839 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TOR1BO14657 336 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 KCNJ13O60928 360 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PEX11AO75192 247 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 SH3BGRLO75368 114 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 ULK1O75385 1050 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 ENO1P06733 434 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 SERPINA6P08185 405 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 EPORP19235 508 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 HTR6P50406 440 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 NEK2P51955 445 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 NME5P56597 212 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TUBB3Q13509 450 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 DDX39BQ13838 428 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 ABRAXAS2Q15018 415 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 RPE65Q16518 533 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TMPRSS11BQ86T26 416 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 RASGRP3Q8IV61 690 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 C1orf210Q8IVY1 113 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 SFTPA2Q8IWL1 248 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PHF6Q8IWS0 365 aaKnown RBP eCLIP3.59□□□□□ -1.836e-6■□□□□ 8.7
RTN4-208ENST00000404909 TRIM48Q8IWZ4 208 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 KIRREL3Q8IZU9 778 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 RAB42Q8N4Z0 105 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 MFSD2AQ8NA29 543 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 FAM46DQ8NEK8 389 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 CEP70Q8NHQ1 597 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 NEIL2Q969S2 332 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 OR4K3Q96R72 315 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 ELOVL6Q9H5J4 265 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 AKTIPQ9H8T0 292 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 MEAF6Q9HAF1 191 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TRNAU1APQ9NX07 287 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 TAAR2Q9P1P5 351 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TRIM33Q9UPN9 1127 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 DGKBQ9Y6T7 804 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PI4KAP42356 2102 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 LOC100653049A0A140TA62 436 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PRR5-ARHGAP8B1AHC4 643 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 C10orf142B7Z368 130 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 UBDO15205 165 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 BCAT2O15382 392 aaPredicted RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 SDC3O75056 442 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 KRT34O76011 436 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 EBLN1P0CF75 366 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 MTHFD1P11586 935 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 GNAZP19086 355 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 VARSP26640 1264 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 PSMB5P28074 263 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 MAGEA9P43362 315 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 CPA2P48052 419 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 BLKP51451 505 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 C21orf59P57076 290 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 YBX1P67809 324 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 MEF2AQ02078 507 aaPredicted RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 GRB7Q14451 532 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PLCL1Q15111 1095 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 ZRSR2Q15696 482 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 IMPG1Q17R60 797 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 WDR45BQ5MNZ6 344 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 CATSPEREQ5SY80 951 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 METTL2BQ6P1Q9 378 aaKnown RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 LPCAT2Q7L5N7 544 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 NRROSQ86YC3 692 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 GBP7Q8N8V2 638 aaPredicted RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 FBXO15Q8NCQ5 510 aaPredicted RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 OR4E2Q8NGC2 313 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 OR52E1Q8NGJ3 308 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 OR56A3Q8NH54 315 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 LMX1AQ8TE12 382 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 CAMK1GQ96NX5 476 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 IER2Q9BTL4 223 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 NTMT1Q9BV86 223 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 GSDMCQ9BYG8 508 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 SAR1AQ9NR31 198 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 TAC3Q9UHF0 121 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 ZNF490Q9ULM2 529 aaPredicted RBP3.59□□□□□ -1.83
RTN4-208ENST00000404909 DOLKQ9UPQ8 538 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 SH2B3Q9UQQ2 575 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 STK38LQ9Y2H1 464 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 DYRK1BQ9Y463 629 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 COLEC10Q9Y6Z7 277 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 B4DGG1 531 aa3.59□□□□□ -1.83
RTN4-208ENST00000404909 PRAMEF4O60810 478 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms