RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 NR4A3Q92570 626 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 SMOC2Q9H3U7 446 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 PAK6Q9NQU5 681 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 NR2E1Q9Y466 385 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 TESMINQ9Y4I5 508 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 A0A1W2PRU2 124 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 OR14I1A6ND48 311 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 CPSF4LA6NMK7 179 aaKnown RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 TP73O15350 636 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ORC5O43913 435 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF12P17014 697 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 WASP42768 502 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 PGDP52209 483 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 FPGSQ05932 587 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ENPP2Q13822 863 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.34□□□□□ -1.555e-6■■■□□ 14.8
VPS13C-204ENST00000395898 PDCD4Q53EL6 469 aaKnown RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 AKIRIN2Q53H80 203 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 CIR1Q86X95 450 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 PLCZ1Q86YW0 608 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 MINDY2Q8NBR6 621 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ATP6V1C2Q8NEY4 427 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ZMIZ2Q8NF64 920 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 OR5T3Q8NGG3 340 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 HTRA1Q92743 480 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 CDKN2AIPNLQ96HQ2 116 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 GAL3ST4Q96RP7 486 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 GATA5Q9BWX5 397 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 PCDHGB2Q9Y5G2 931 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 CLIC1O00299 241 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ZBTB11O95625 1053 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 RAB36O95755 333 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 AHCYP23526 432 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 LRRC32Q14392 662 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 SIRPB2Q5JXA9 342 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 UBAP2Q5T6F2 1119 aaKnown RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ZNF554Q86TJ5 538 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 SDR16C5Q8N3Y7 309 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 DCBLD1Q8N8Z6 715 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 DBF4BQ8NFT6 615 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 SCAMP5Q8TAC9 235 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 KLHL6Q8WZ60 621 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 ART5Q96L15 291 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 HBEGFQ99075 208 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.34□□□□□ -1.55
VPS13C-204ENST00000395898 MED11Q9P086 117 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 FKBPLQ9UIM3 349 aa5.34□□□□□ -1.55
VPS13C-204ENST00000395898 TPST2O60704 377 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 RLN2P04090 185 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 CDH1P12830 882 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 MLLT3P42568 568 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-204ENST00000395898 CDH12P55289 794 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 VLDLRP98155 873 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 INO80EQ8NBZ0 244 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-204ENST00000395898 LRTOMTQ8WZ04 291 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 SLC39A3Q9BRY0 314 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 POLR2J2Q9GZM3 115 aaKnown RBP5.34□□□□□ -1.56
VPS13C-204ENST00000395898 RGS17Q9UGC6 210 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-204ENST00000395898 FABP12A6NFH5 140 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 TNFRSF10BO14763 440 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 DCLK1O15075 740 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 ADGRE1Q14246 886 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 LIN52Q52LA3 116 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 SMYD5Q6GMV2 418 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 KCTD8Q6ZWB6 473 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 OR6K6Q8NGW6 343 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 ZCCHC10Q8TBK6 192 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 ING5Q8WYH8 240 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 CAPNS2Q96L46 248 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 CXorf21Q9HAI6 301 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 HHATLQ9HCP6 504 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 CHMP1AQ9HD42 196 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-204ENST00000395898 POFUT2Q9Y2G5 429 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 TEX264Q9Y6I9 313 aa5.34□□□□□ -1.56
VPS13C-204ENST00000395898 KLRG2A4D1S0 409 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF726A6NNF4 738 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 NDUFS4O43181 175 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 EPOP01588 193 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 XKP51811 444 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ATXN1P54253 815 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TSPAN5P62079 268 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 EIF5AP63241 154 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 CYP4F8P98187 520 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TLR1Q15399 786 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF548Q8NEK5 533 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 OR2AP1Q8NGE2 309 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 OR51V1Q9H2C8 321 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 MEMO1Q9Y316 297 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 A0A0U1RQF3 1178 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ZNF487B1APH4 448 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 RNF225M0QZC1 329 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TGFB1P01137 390 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 LINGO3P0C6S8 592 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 ETS2P15036 469 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 RPL26P61254 145 aaKnown RBP5.33□□□□□ -1.56
VPS13C-204ENST00000395898 EVX2Q03828 476 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PRKCZQ05513 592 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 UBXN2BQ14CS0 331 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 TIGD6Q17RP2 521 aa5.33□□□□□ -1.56
VPS13C-204ENST00000395898 PRAMEF14Q5SWL7 426 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms