RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FLOT2Q14254 428 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 GGTA1PQ4G0N0 100 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 EEF1AKMT2Q5JPI9 291 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 KIAA0895LQ68EN5 471 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 MBOAT1Q6ZNC8 495 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 SPATA19Q7Z5L4 167 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PDSS2Q86YH6 399 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 DCUN1D3Q8IWE4 304 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 GJD3Q8N144 294 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 LILRA3Q8N6C8 439 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 OR9A1PQ8NGU1 263 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 MAFAQ8NHW3 353 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 TUBGCP3Q96CW5 907 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 WDR92Q96MX6 357 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 BTBD9Q96Q07 612 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 UHRF1Q96T88 793 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 TMEM45AQ9NWC5 275 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 STOX2Q9P2F5 926 aaPredicted RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 SUCOQ9UBS9 1254 aaKnown RBP17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 MOSPD1Q9UJG1 213 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 ASF1AQ9Y294 204 aa17.69■□□□□ 0.42
CCDC88C-203ENST00000389856 PRAMEF26H0Y7S4 382 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 TNFRSF10CO14798 259 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 KDM1AO60341 852 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 IDSP22304 550 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 ACADLP28330 430 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 CD6P30203 668 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 GDF5P43026 501 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 BDKRB1P46663 353 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 THOP1P52888 689 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 FOXA1P55317 472 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 TRAP1Q12931 704 aaKnown RBP17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 SPATS1Q496A3 300 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 CAPN13Q6MZZ7 669 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 LETMD1Q6P1Q0 360 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 LPCAT2Q7L5N7 544 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 KBTBD2Q8IY47 623 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 SIX5Q8N196 739 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 TSPEARQ8WU66 669 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 GATA6Q92908 595 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 ROPN1LQ96C74 230 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 SCARF2Q96GP6 870 aaPredicted RBP17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 KCNA7Q96RP8 456 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 PKP4Q99569 1192 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 IER2Q9BTL4 223 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 TRIT1Q9H3H1 467 aaKnown RBP17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 GPRC5BQ9NZH0 403 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 SNX6Q9UNH7 406 aa17.68■□□□□ 0.42
CCDC88C-203ENST00000389856 H3BNX3 289 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 SLC28A1O00337 649 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 CLGNO14967 610 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PNLIPRP1P54315 467 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PSME3P61289 254 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 ZNF33BQ06732 778 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 GRIK2Q13002 908 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 LRP8Q14114 963 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 MMEL1Q495T6 779 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PYCR3Q53H96 274 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 COQ5Q5HYK3 327 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 IRAK1BP1Q5VVH5 260 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 CAPRIN2Q6IMN6 1127 aaKnown RBP17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PRMT9Q6P2P2 845 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 CHST15Q7LFX5 561 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PQLC1Q8N2U9 271 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PCYOX1LQ8NBM8 494 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 OR56A3Q8NH54 315 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 TFGQ92734 400 aaPredicted RBP17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PCED1AQ9H1Q7 454 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 AKTIPQ9H8T0 292 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 FZD3Q9NPG1 666 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 EBF1Q9UH73 591 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 ZNF225Q9UK10 706 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 CYP8B1Q9UNU6 501 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 PRKAB1Q9Y478 270 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 TIMM22Q9Y584 194 aa17.67■□□□□ 0.42
CCDC88C-203ENST00000389856 KRBA1A5PL33 1030 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 C19orf67A6NJJ6 358 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 RGS14O43566 566 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ULK1O75385 1050 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 LINC00032P0C843 101 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ACP5P13686 325 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 PCSK2P16519 638 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 PRDX3P30048 256 aaKnown RBP17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 RABIFP47224 123 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 CEACAM7Q14002 265 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ARHGAP19Q14CB8 494 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ATP6AP1LQ52LC2 224 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 AGKQ53H12 422 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 XKR7Q5GH72 579 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 OGFRL1Q5TC84 451 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 LIPJQ5W064 366 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 OGFOD2Q6N063 350 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 IL27RAQ6UWB1 636 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 FAM83HQ6ZRV2 1179 aaPredicted RBP17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 THOC6Q86W42 341 aaKnown RBP17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 SYTL1Q8IYJ3 562 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 SPEM1Q8N4L4 309 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 ASB9Q96DX5 294 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 MED8Q96G25 268 aa17.66■□□□□ 0.42
CCDC88C-203ENST00000389856 TOE1Q96GM8 510 aaKnown RBP17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms