RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 PRKAR2AP13861 404 aaKnown RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 PRKCAP17252 672 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 PTPRNQ16849 979 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 PRSS36Q5K4E3 855 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 WDR45BQ5MNZ6 344 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 SCN4BQ8IWT1 228 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 EFHBQ8N7U6 833 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 GOLM1Q8NBJ4 401 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 C8orf48Q96LL4 319 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 ZNF300Q96RE9 604 aaPredicted RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 APOL4Q9BPW4 351 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 KRT84Q9NSB2 600 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 QPCTLQ9NXS2 382 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 ABI2Q9NYB9 513 aaPredicted RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 RNF6Q9Y252 685 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 GREB1Q4ZG55 1949 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 ELNP15502 786 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 DNAJB1P25685 340 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 GRK4P32298 578 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 MVKQ03426 396 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 SEMA3AQ14563 771 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 PON2Q15165 354 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 MED22Q15528 200 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 CCDC85BQ15834 202 aaPredicted RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 TIGD7Q6NT04 549 aaPredicted RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 SLC24A5Q71RS6 500 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 CEP68Q76N32 757 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 SIDT2Q8NBJ9 832 aaKnown RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 PAPD5Q8NDF8 572 aaKnown RBP13.53□□□□□ -0.24
SDC1-202ENST00000381150 OR5K1Q8NHB7 308 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 FATE1Q969F0 183 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 SERPINB11Q96P15 392 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 EGFL8Q99944 293 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 SP140LQ9H930 580 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 TIGARQ9NQ88 270 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 FNIP2Q9P278 1114 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 MIA3Q5JRA6 1907 aa13.53□□□□□ -0.24
SDC1-202ENST00000381150 ICMTO60725 284 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 GABARAPL2P60520 117 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 GALNT1Q10472 559 aaPredicted RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 SDE2Q6IQ49 451 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 CIR1Q86X95 450 aaPredicted RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 TTC9BQ8N6N2 239 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 OR56A4Q8NGH8 313 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 PHF10Q8WUB8 498 aaKnown RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 FUBP3Q96I24 572 aaKnown RBP eCLIP13.52□□□□□ -0.24
SDC1-202ENST00000381150 KCNC2Q96PR1 638 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 TRNT1Q96Q11 434 aaKnown RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 ASB2Q96Q27 587 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 FYTTD1Q96QD9 318 aaKnown RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 OR52E6Q96RD3 313 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 SMPD4Q9NXE4 827 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 RNF186Q9NXI6 227 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 VNN3Q9NY84 501 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 ZNF639Q9UID6 485 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 IGLV3-10A0A075B6K4 115 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 NIPSNAP2O75323 286 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 SEC22BO75396 215 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 CRYZL1O95825 349 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 MMP2P08253 660 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 GRK3P35626 688 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 SLC26A3P40879 764 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 CDKN1CP49918 316 aaPredicted RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 MXD1Q05195 221 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 MS4A13Q5J8X5 152 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 AGAP6Q5VW22 663 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 ANGPTL8Q6UXH0 198 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 DLEU7Q6UYE1 221 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 STX19Q8N4C7 294 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 PCSK9Q8NBP7 692 aaKnown RBP13.52□□□□□ -0.24
SDC1-202ENST00000381150 OR52J3Q8NH60 311 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 SLC13A3Q8WWT9 602 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 AGAP4Q96P64 663 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 TAS2R16Q9NYV7 291 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 PCDHGB6Q9Y5F9 930 aa13.52□□□□□ -0.24
SDC1-202ENST00000381150 UPK3BL1B0FP48 263 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 UPK3BL2E5RIL1 263 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 CREG1O75629 220 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 FGF4P08620 206 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 UROSP10746 265 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 HAPLN1P10915 354 aaPredicted RBP13.52□□□□□ -0.25
SDC1-202ENST00000381150 MSH3P20585 1137 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 KRT20P35900 424 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 GDF5P43026 501 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 SLC15A1P46059 708 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 MRPL58Q14197 206 aaKnown RBP13.52□□□□□ -0.25
SDC1-202ENST00000381150 PLEKHG6Q3KR16 790 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 ALFQ53S48 1182 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 SIRPB2Q5JXA9 342 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 ZNF544Q6NX49 715 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 GLB1LQ6UWU2 654 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 VTCN1Q7Z7D3 282 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 ZFAND4Q86XD8 727 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 GPSM1Q86YR5 675 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 BEND7Q8N7W2 519 aaPredicted RBP13.52□□□□□ -0.25
SDC1-202ENST00000381150 TP53I13Q8NBR0 393 aaPredicted RBP13.52□□□□□ -0.25
SDC1-202ENST00000381150 PSMG2Q969U7 264 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 IMP4Q96G21 291 aaKnown RBP13.52□□□□□ -0.25
SDC1-202ENST00000381150 PHOX2BQ99453 314 aa13.52□□□□□ -0.25
SDC1-202ENST00000381150 OR2B2Q9GZK3 357 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms