RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 SF1Q15637 639 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 PHKG1Q16816 387 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 DEFB110Q30KQ9 67 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 FAM153CQ494X1 144 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 GRTP1Q5TC63 336 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 LRRC8EQ6NSJ5 796 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 C19orf48Q6RUI8 117 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 MBOAT1Q6ZNC8 495 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 CDHR3Q6ZTQ4 885 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 CEP128Q6ZU80 1094 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 RAB42Q8N4Z0 105 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 C19orf47Q8N9M1 422 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 FBXO15Q8NCQ5 510 aaPredicted RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 UHMK1Q8TAS1 419 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 HMGCLL1Q8TB92 370 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 ZNF480Q8WV37 535 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 ANKRD49Q8WVL7 239 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 HNRNPLLQ8WVV9 542 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 TEFMQ96QE5 360 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 GPR22Q99680 433 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 ACAT2Q9BWD1 397 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 UNKQ9C0B0 810 aaKnown RBP12.89□□□□□ -0.35
VPS28-202ENST00000377348 B3GNT4Q9C0J1 378 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 PDE7BQ9NP56 450 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 LNPEPQ9UIQ6 1025 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 RARRES3Q9UL19 164 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 PDE10AQ9Y233 779 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 PCDHB11Q9Y5F2 797 aa12.89□□□□□ -0.35
VPS28-202ENST00000377348 SNRNP200O75643 2136 aaKnown RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 STMND1H3BQB6 276 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 HCRTR1O43613 425 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 STK17BO94768 372 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 C8GP07360 202 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 MYBL2P10244 700 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 LIPCP11150 499 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 FGF5P12034 268 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 CYP2A7P20853 494 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 IMPA1P29218 277 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 OAS2P29728 719 aaKnown RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 PHBP35232 272 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SPRP35270 261 aaPredicted RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 GMPRP36959 345 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 PNLIPRP1P54315 467 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 TUBB4BP68371 445 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 POU4F1Q01851 419 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 IL11RAQ14626 422 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SLMAPQ14BN4 828 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 UAP1Q16222 522 aaPredicted RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 TMTC4Q5T4D3 741 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 PRAMEF17Q5VTA0 474 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 KIAA1614Q5VZ46 1190 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 LRRC69Q6ZNQ3 347 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 TIPARPQ7Z3E1 657 aaKnown RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 CMC1Q7Z7K0 106 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 PPP1R3BQ86XI6 285 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 DTX1Q86Y01 620 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SPATA6LQ8N4H0 392 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SLC22A18Q96BI1 424 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 ZNF501Q96CX3 271 aaPredicted RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 CRELD1Q96HD1 420 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 CYTH2Q99418 400 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 MIPEPQ99797 713 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 ZPBPQ9BS86 351 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SLC12A9Q9BXP2 914 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 ULBP3Q9BZM4 244 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 SPRY4Q9C004 299 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 TSPYL1Q9H0U9 437 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 ACSS3Q9H6R3 686 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 GPAMQ9HCL2 828 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 ABCF3Q9NUQ8 709 aa12.88□□□□□ -0.35
VPS28-202ENST00000377348 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.88□□□□□ -0.35
VPS28-202ENST00000377348 CACNA1BQ00975 2339 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 NPEPPSL1A6NEC2 478 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 TMEM150CB9EJG8 249 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 E7ENX8 843 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 CDC7O00311 574 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 SLC16A5O15375 505 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 NRP2O60462 931 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 RAD1O60671 282 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 KIAA0754O94854 1291 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 WISP3O95389 354 aaPredicted RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 DLGAP3O95886 979 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 CTSBP07858 339 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 CD82P27701 267 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 SLC12A2P55011 1212 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 TAP2Q03519 686 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 TLE3Q04726 772 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 SP140Q13342 867 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 NAB1Q13506 487 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 BMPR2Q13873 1038 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 PWWP2BQ6NUJ5 590 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 VASH2Q86V25 355 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 LRRC56Q8IYG6 542 aaPredicted RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 SYTL1Q8IYJ3 562 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 NKAPQ8N5F7 415 aaKnown RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 OR2L3Q8NG85 312 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 OR2A1Q8NGT9 310 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 OR1L3Q8NH93 324 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 MCOLN3Q8TDD5 553 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 SMPDL3AQ92484 453 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms