RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ISL2Q96A47 359 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 APIPQ96GX9 242 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 YIPF4Q9BSR8 244 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 HERC2P3Q9BVR0 1158 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 CEP44Q9C0F1 390 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 ZNF556Q9HAH1 456 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 HSFX1Q9UBD0 423 aa11.65□□□□□ -0.54
USP1-201ENST00000339950 SOX14O95416 240 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 NUDT7P0C024 238 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 GPC1P35052 558 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 ACADVLP49748 655 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 BMXP51813 675 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 ALDH6A1Q02252 535 aaKnown RBP11.65□□□□□ -0.55
USP1-201ENST00000339950 COLEC12Q5KU26 742 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 KANK2Q63ZY3 851 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 C17orf99Q6UX52 265 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 UBASH3BQ8TF42 649 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 FUBP3Q96I24 572 aaKnown RBP eCLIP11.65□□□□□ -0.55
USP1-201ENST00000339950 C8orf48Q96LL4 319 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 TCF25Q9BQ70 676 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 PCDHB14Q9Y5E9 798 aa11.65□□□□□ -0.55
USP1-201ENST00000339950 A8MV72 311 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 CLIC1O00299 241 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 INPPL1O15357 1258 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ALDH1A1P00352 501 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 INHAP05111 366 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 C8BP07358 591 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ANXA4P09525 319 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 SLC16A1P53985 500 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ARF5P84085 180 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 RAPSNQ13702 412 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 TAB1Q15750 504 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ZNF284Q2VY69 593 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 CARM1Q86X55 608 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 NLGN4XQ8N0W4 816 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 STK40Q8N2I9 435 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 C1orf52Q8N6N3 182 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 CHST14Q8NCH0 376 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 VPS37AQ8NEZ2 397 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 SLC39A13Q96H72 371 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 FOPNLQ96NB1 174 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 HEPHQ9BQS7 1158 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 AASDHPPTQ9NRN7 309 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 INTS10Q9NVR2 710 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 ITM2BQ9Y287 266 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 RP1L1Q8IWN7 2480 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 LOC100130705A0A1B0GUX0 176 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 LOC285095A0A1B0GVY8 99 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 HLA-EP13747 358 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ST13P50502 369 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 FKBP1BP68106 108 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 TTC29Q8NA56 475 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 HM13Q8TCT9 377 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 STON2Q8WXE9 905 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 PROX1Q92786 737 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 BARD1Q99728 777 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 AGPAT4Q9NRZ5 378 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 TOR4AQ9NXH8 423 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 GPC6Q9Y625 555 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 RBBP6Q7Z6E9 1792 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 MROH6A6NGR9 719 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 CNOT3O75175 753 aaKnown RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 NDUFS2O75306 463 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 PEX11BO96011 259 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 SELPP16109 830 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 BPIP17213 487 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 NFATC2Q13469 925 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 DPY19L3Q6ZPD9 716 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 CENPSQ8N2Z9 138 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 ELMOD1Q8N336 334 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 NCSTNQ92542 709 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 KAT2AQ92830 837 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 TMEM203Q969S6 136 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 COL26A1Q96A83 441 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 C1orf74Q96LT6 269 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 NPLQ9BXD5 320 aaPredicted RBP11.64□□□□□ -0.55
USP1-201ENST00000339950 MAF1Q9H063 256 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 CD300AQ9UGN4 299 aa11.64□□□□□ -0.55
USP1-201ENST00000339950 RTCAO00442 366 aaKnown RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 ERAL1O75616 437 aaKnown RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 PAPSS2O95340 614 aaPredicted RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 LCKP06239 509 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 CA5AP35218 305 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 SPAM1P38567 509 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 CDKN2CP42773 168 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 TXNL4AP83876 142 aaKnown RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 PLPP4Q5VZY2 271 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 MINDY1Q8N5J2 469 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 TP53INP1Q96A56 240 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 RNF31Q96EP0 1072 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 MAELQ96JY0 434 aaKnown RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 IL17FQ96PD4 163 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 KCNS3Q9BQ31 491 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 SEZ6LQ9BYH1 1024 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 NPIPB15A6NHN6 443 aaPredicted RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 PDZK1P1A8MUH7 402 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 MANBAO00462 879 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 KDELR3O43731 214 aa11.63□□□□□ -0.55
USP1-201ENST00000339950 NME6O75414 186 aaPredicted RBP11.63□□□□□ -0.55
USP1-201ENST00000339950 CDH1P12830 882 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms