RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 TCP10LQ8TDR4 215 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 ATP6V1G3Q96LB4 118 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 RTKNQ9BST9 563 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PTBP2Q9UKA9 531 aaKnown RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 ATXN7L1Q9ULK2 861 aaPredicted RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 DCHS1Q96JQ0 3298 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PIPSLA2A3N6 862 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 GSAPA4D1B5 854 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 NTN3O00634 580 aaPredicted RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 KLK8O60259 260 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 CPNE6O95741 557 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PROCP04070 461 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 S100BP04271 92 aaPredicted RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 GFAPP14136 432 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PEBP1P30086 187 aaKnown RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 CSF2RBP32927 897 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PPP1CAP62136 330 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 E2F1Q01094 437 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 NAE1Q13564 534 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PFKFB4Q16877 469 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 C18orf21Q32NC0 220 aaPredicted RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 FBXO48Q5FWF7 155 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 WDR74Q6RFH5 385 aaPredicted RBP21.44■■□□□ 1.02
SDC3-202ENST00000339394 SMPDL3AQ92484 453 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 PYCR2Q96C36 320 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 NUDT22Q9BRQ3 303 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 RAB33BQ9H082 229 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 SYNDIG1Q9H7V2 258 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 SLC17A7Q9P2U7 560 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 EPHA6Q9UF33 1036 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 ENTPD2Q9Y5L3 495 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 ASXL3Q9C0F0 2248 aa21.44■■□□□ 1.02
SDC3-202ENST00000339394 A0A1W2PPV9 198 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 CAPN5O15484 640 aaPredicted RBP21.43■■□□□ 1.02
SDC3-202ENST00000339394 TAPBPO15533 448 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 KCNK5O95279 499 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 HOXB3P14651 431 aaPredicted RBP21.43■■□□□ 1.02
SDC3-202ENST00000339394 RPA3P35244 121 aaPredicted RBP21.43■■□□□ 1.02
SDC3-202ENST00000339394 TSTA3Q13630 321 aaPredicted RBP21.43■■□□□ 1.02
SDC3-202ENST00000339394 KIR2DS3Q14952 304 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 ARMC6Q6NXE6 501 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 IRGCQ6NXR0 463 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 TMPRSS9Q7Z410 1059 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 TCAIMQ8N3R3 496 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 OR56A3Q8NH54 315 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 MED8Q96G25 268 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 GFM1Q96RP9 751 aaKnown RBP21.43■■□□□ 1.02
SDC3-202ENST00000339394 ACTR10Q9NZ32 417 aa21.43■■□□□ 1.02
SDC3-202ENST00000339394 PCNX2A6NKB5 2137 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 C2orf74A8MZ97 194 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 ISM1B1AKI9 464 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 PRICKLE3O43900 615 aaPredicted RBP21.42■■□□□ 1.02
SDC3-202ENST00000339394 DKK1O94907 266 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 FTH1P19P0C7X4 201 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 PRDX3P30048 256 aaKnown RBP21.42■■□□□ 1.02
SDC3-202ENST00000339394 GGT5P36269 586 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 GDF5P43026 501 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 GFERP55789 205 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 TBPL1P62380 186 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 PTCHD3Q3KNS1 767 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 PLXDC1Q8IUK5 500 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 FBXO39Q8N4B4 442 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 ARMC2Q8NEN0 867 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 WDR48Q8TAF3 677 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 ESAMQ96AP7 390 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 SLC22A18Q96BI1 424 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 PHF21BQ96EK2 531 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 ZDHHC12Q96GR4 267 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 FAM111AQ96PZ2 611 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 OR2A14Q96R47 310 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 TMEM79Q9BSE2 394 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 ZMYND15Q9H091 742 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 KCNK9Q9NPC2 374 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 CCDC177Q9NQR7 707 aaPredicted RBP21.42■■□□□ 1.02
SDC3-202ENST00000339394 ABCF3Q9NUQ8 709 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 INTS7Q9NVH2 962 aaKnown RBP21.42■■□□□ 1.02
SDC3-202ENST00000339394 DLL3Q9NYJ7 618 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 WWOXQ9NZC7 414 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 TMEM9Q9P0T7 183 aa21.42■■□□□ 1.02
SDC3-202ENST00000339394 DCDC2BA2VCK2 349 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 G3V2L1 256 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 MATN2O00339 956 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 PRPF4O43172 522 aaKnown RBP eCLIP21.41■■□□□ 1.02
SDC3-202ENST00000339394 SMIM24O75264 130 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 MPSTP25325 297 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 SLC6A12P48065 614 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 ALDH18A1P54886 795 aaKnown RBP21.41■■□□□ 1.02
SDC3-202ENST00000339394 SPIDRQ14159 915 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 MPP2Q14168 576 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 TMEM71Q6P5X7 295 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 ZNF574Q6ZN55 896 aaPredicted RBP21.41■■□□□ 1.02
SDC3-202ENST00000339394 CCDC63Q8NA47 563 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 OR2A1Q8NGT9 310 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 FLVCR1-AS1Q8TAF5 88 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 TGM7Q96PF1 710 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 ACAT2Q9BWD1 397 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 SGPP1Q9BX95 441 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 RP1P56715 2156 aa21.41■■□□□ 1.02
SDC3-202ENST00000339394 DLX3O60479 287 aa21.4■■□□□ 1.02
SDC3-202ENST00000339394 CDK4P11802 303 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms