RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 DTD2Q96FN9 168 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DHRS4Q9BTZ2 278 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 DUSP26Q9BV47 211 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF334Q9HCZ1 680 aaPredicted RBP6.7□□□□□ -1.34
SF3B1-201ENST00000335508 CD84Q9UIB8 345 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 MYH4Q9Y623 1939 aa6.7□□□□□ -1.34
SF3B1-201ENST00000335508 TNFRSF10CO14798 259 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PIP5K1BO14986 540 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 OR1F1O43749 312 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ATP6V1B2P21281 511 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SERPINB10P48595 397 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 C2orf80Q0P641 193 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 TMEM259Q4ZIN3 620 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FBXW10Q5XX13 1052 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ALG1LQ6GMV1 187 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PIANPQ8IYJ0 282 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ULK2Q8IYT8 1036 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FAM13CQ8NE31 585 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FIG4Q92562 907 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 GFM2Q969S9 779 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 COL26A1Q96A83 441 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ESAMQ96AP7 390 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PPM1MQ96MI6 270 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 MTERF1Q99551 399 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 EPB41L4BQ9H329 900 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ARHGEF3Q9NR81 526 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RPS6KB2Q9UBS0 482 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 KCNK6Q9Y257 313 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SLC22A14Q9Y267 594 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 B4GALT3O60512 393 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 LINC00032P0C843 101 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PIM1P11309 404 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 DHPSP49366 369 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 UAP1L1Q3KQV9 507 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 DCBLD1Q8N8Z6 715 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SP7Q8TDD2 431 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 USP7Q93009 1102 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RGMAQ96B86 450 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CAMK1GQ96NX5 476 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SEPHS2Q99611 448 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF184Q99676 751 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 TIMM29Q9BSF4 260 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CAAP1Q9H8G2 361 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 IL1RAPL1Q9NZN1 696 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FBXO9Q9UK97 447 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 A0A1W2PPC1 479 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ELOVL7A1L3X0 281 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PRKCGP05129 697 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 C1GALT1C1LP0DN25 315 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CD1DP15813 335 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF140P52738 457 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FAM174BQ3ZCQ3 159 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FUT11Q495W5 492 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PRRT3Q5FWE3 981 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 DENND5AQ6IQ26 1287 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PQLC1Q8N2U9 271 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ZNF248Q8NDW4 579 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SORCS1Q8WY21 1168 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 FBXL8Q96CD0 374 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CRISPLD1Q9H336 500 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 OAS3Q9Y6K5 1087 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PHIPQ8WWQ0 1821 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 KRT87PA6NCN2 255 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SAC3D1A6NKF1 404 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ADAMDEC1O15204 470 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CNOT3O75175 753 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SH3BGRLO75368 114 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 UBXN7O94888 489 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SEMA3DO95025 777 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ACRV1P26436 265 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 MMP12P39900 470 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PEX19P40855 299 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 GRIA3P42263 894 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RFX3P48380 749 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ACTR3P61158 418 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 LRRC36Q1X8D7 754 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SFRP1Q8N474 314 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 GOLM1Q8NBJ4 401 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 UBXN10Q96LJ8 280 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 MRPS30Q9NP92 439 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 OSER1Q9NX31 292 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 TEKT2Q9UIF3 430 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 SNX8Q9Y5X2 465 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 HYKKA2RU49 373 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 NPIPB15A6NHN6 443 aaPredicted RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 TTC34A8MYJ7 566 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 AXIN1O15169 862 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PCDH7O60245 1069 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ZMPSTE24O75844 475 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PSMG1O95456 288 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PCCBP05166 539 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ENDOUP21128 410 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 CRATP43155 626 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RABIFP47224 123 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RGRP47804 291 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ERFP50548 548 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 ATP4BP51164 291 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 PRKAG1P54619 331 aa6.69□□□□□ -1.34
SF3B1-201ENST00000335508 MRPS22P82650 360 aaKnown RBP6.69□□□□□ -1.34
SF3B1-201ENST00000335508 RBBP4Q09028 425 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms