RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 COPB2P35606 906 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 MAZP56270 477 aaKnown RBP3.06□□□□□ -1.92
HMGB1-201ENST00000326004 LINC01547P58512 204 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-201ENST00000326004 HERV-K104P61576 105 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 KLC1Q07866 573 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 GPR17Q13304 367 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF273Q14593 569 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 CCDC6Q16204 474 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 KIAA1644Q3SXP7 199 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 MCMDC2Q4G0Z9 681 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SPDYCQ5MJ68 293 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 CYP4A22Q5TCH4 519 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 ARMC3Q5W041 872 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 IL27RAQ6UWB1 636 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 MFSD6Q6ZSS7 791 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 KRT77Q7Z794 578 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 VSIG1Q86XK7 387 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 TMEM139Q8IV31 216 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 THNSL1Q8IYQ7 743 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 MAPKAPK5-AS1Q8N8E1 139 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SLC4A11Q8NBS3 891 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 TMEM143Q96AN5 459 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SIPA1Q96FS4 1042 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 OTUB1Q96FW1 271 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-201ENST00000326004 TRPV4Q9HBA0 871 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 A4GALTQ9NPC4 353 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SIX2Q9NPC8 291 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SDR39U1Q9NRG7 319 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-201ENST00000326004 CNTNAP2Q9UHC6 1331 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF112Q9UJU3 913 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 RNF150Q9ULK6 438 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 C2CD2Q9Y426 696 aa3.06□□□□□ -1.92
HMGB1-201ENST00000326004 SETD1AO15047 1707 aaKnown RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 A0A087WV48 116 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 IGHV4-61A0A0C4DH41 118 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TSPY2A6NKD2 308 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ANXA2P2A6NMY6 339 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ACSL3O95573 720 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 HSPA4LO95757 839 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CLPTM1O96005 669 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 IGHV4-59P01825 116 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TSPY3P0CV98 308 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TSPY8P0CW00 308 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 IGHV4-31P0DP07 118 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CYP11B2P19099 503 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CDC25CP30307 473 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TUBB4BP68371 445 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 KCNJ10P78508 379 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TSPY1Q01534 308 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF415Q09FC8 603 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 NPTX1Q15818 432 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PHKG1Q16816 387 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ALDH1L2Q3SY69 923 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 UGT3A2Q3SY77 523 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PHLDA2Q53GA4 152 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PDLIM3Q53GG5 364 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 TCTE1Q5JU00 501 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 C6orf136Q5SQH8 315 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PPP1R21Q6ZMI0 780 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 C11orf57Q6ZUT1 292 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 METTL23Q86XA0 190 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 APLFQ8IW19 511 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CDK20Q8IZL9 346 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CCAR2Q8N163 923 aaKnown RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 NDUFAF2Q8N183 169 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ZNF383Q8NA42 475 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 OR11H4Q8NGC9 324 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 OR52N5Q8NH56 324 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 SETD6Q8TBK2 473 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 THOC1Q96FV9 657 aaKnown RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 SENP5Q96HI0 755 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 SPATA17Q96L03 361 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PGLYRP2Q96PD5 576 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 GBP5Q96PP8 586 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 DUX3Q96PT4 197 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 URM1Q9BTM9 101 aaKnown RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PITPNM3Q9BZ71 974 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 PRRG4Q9BZD6 226 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 MTMR12Q9C0I1 747 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 CPVLQ9H3G5 476 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ZCCHC17Q9NP64 241 aaKnown RBP3.05□□□□□ -1.92
HMGB1-201ENST00000326004 C2orf42Q9NWW7 574 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 KCNJ14Q9UNX9 436 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 ARID2Q68CP9 1835 aa3.05□□□□□ -1.92
HMGB1-201ENST00000326004 YEATS2Q9ULM3 1422 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 C2orf81A6NN90 581 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 ENO4A6NNW6 628 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 O00370 1275 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 ARPC2O15144 300 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 AP5Z1O43299 807 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 DFFBO76075 338 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 PENKP01210 267 aaPredicted RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 IGKV3-20P01619 116 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 MYL6BP14649 208 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 IFNAR1P17181 557 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 CDH3P22223 829 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 JAK1P23458 1154 aa3.04□□□□□ -1.92
HMGB1-201ENST00000326004 ACAT1P24752 427 aaKnown RBP3.04□□□□□ -1.92
HMGB1-201ENST00000326004 CEACAM8P31997 349 aaPredicted RBP3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms