RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM43BQ6ZT52 329 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CEP97Q8IW35 865 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SLC22A15Q8IZD6 547 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF649Q9BS31 505 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 TMEM39AQ9NV64 488 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SPATA7Q9P0W8 599 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CDRT1O95170 752 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 FGF19O95750 216 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 AGR2O95994 175 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 BMP6P22004 513 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 MRPS6P82932 125 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 PITRM1Q5JRX3 1037 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SPATA22Q8NHS9 363 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 TMEM203Q969S6 136 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 DUXAA6NLW8 204 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF705EA8MWA4 302 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SLC19A2O60779 497 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 NATD1Q8N6N6 113 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 BARD1Q99728 777 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 EIF2B4Q9UI10 523 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 KIAA1210Q9ULL0 1709 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 BORCS7-ASMTA0A0B4J1R7 106 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 A0A1B0GVM2 712 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 DDTLA6NHG4 134 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 BTBD19C9JJ37 291 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SSX5O60225 188 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 MAFO75444 373 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ATP5A1P25705 553 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 FOXM1Q08050 763 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 PDE12Q6L8Q7 609 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF558Q96NG5 402 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 GATA5Q9BWX5 397 aaPredicted RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SLC25A51Q9H1U9 297 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 RNF6Q9Y252 685 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CSTBP04080 98 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 IL7P13232 177 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SMAD3P84022 425 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 TLE2Q04725 743 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SNAP47Q5SQN1 464 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 MON1BQ7L1V2 547 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 SNX29P2Q8IUI4 249 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 MRPS23Q9Y3D9 190 aaKnown RBP13.59□□□□□ -0.23
CSPG4-201ENST00000308508 CDH10Q9Y6N8 788 aa13.59□□□□□ -0.23
CSPG4-201ENST00000308508 ABCB7O75027 752 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 MPIP34949 423 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 TNFSF9P41273 254 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 ZNF773Q6PK81 442 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 XYLT1Q86Y38 959 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 EGFL6Q8IUX8 553 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 LGI4Q8N135 537 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 DCAKDQ8WVC6 231 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 PCDHAC1Q9H158 963 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 P2RX2Q9UBL9 471 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 SLC7A8Q9UHI5 535 aa13.58□□□□□ -0.23
CSPG4-201ENST00000308508 E9PAM4 449 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 IDSP22304 550 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ALG10BQ5I7T1 473 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 CLEC12AQ5QGZ9 265 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ARL9Q6T311 187 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 DCBLD1Q8N8Z6 715 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 FCAMRQ8WWV6 532 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 MMP27Q9H306 513 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 NRXN1Q9ULB1 1477 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 LRRN3E7EW58 273 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 PUS10Q3MIT2 529 aaKnown RBP13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ATAT1Q5SQI0 421 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 YIPF7Q8N8F6 280 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 COL21A1Q96P44 957 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 TMEM209Q96SK2 561 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 SDCBP2Q9H190 292 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 MIR1-1HGQ9H1L0 117 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 LRRN3Q9H3W5 708 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 HCN3Q9P1Z3 774 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 GRIN2DO15399 1336 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 J3QRK9 145 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ARPC2O15144 300 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 THEGLP0DJG4 465 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 GBE1Q04446 702 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 FBXL8Q96CD0 374 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 RIPOR3Q96MK2 946 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 PCDHB18PQ96TA0 734 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 C1orf21Q9H246 121 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 CXCL11O14625 94 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 B3GALT2O43825 422 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ADRA1BP35368 520 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 PTGER3P43115 390 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 RHDQ02161 417 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 PTGR1Q14914 329 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 NOMO2Q5JPE7 1267 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 SH3PXD2AQ5TCZ1 1133 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 FIP1L1Q6UN15 594 aaKnown RBP13.58□□□□□ -0.24
CSPG4-201ENST00000308508 ANKS1BQ7Z6G8 1248 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 VIPP01282 170 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 FNTBP49356 437 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 FGL1Q08830 312 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 C9orf57Q5W0N0 161 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 CYP4V2Q6ZWL3 525 aaPredicted RBP13.58□□□□□ -0.24
CSPG4-201ENST00000308508 CFAP52Q8N1V2 620 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 SCGB1C1Q8TD33 95 aa13.58□□□□□ -0.24
CSPG4-201ENST00000308508 HAS1Q92839 578 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms