RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 TLE6Q9H808 572 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 THUMPD1Q9NXG2 353 aaKnown RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 VPS29Q9UBQ0 182 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 OR2AG2A6NM03 316 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 GABBR2O75899 941 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SNAP29O95721 258 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PRLP01236 227 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 HLCSP50747 726 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 RABGGTBP53611 331 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FAM182AQ5T1J6 154 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 CILP2Q8IUL8 1156 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PHYKPLQ8IUZ5 450 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 TXNDC5Q8NBS9 432 aaKnown RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SIPA1Q96FS4 1042 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 C12orf4Q9NQ89 552 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 MOCS1Q9NZB8 636 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 TBC1D24Q9ULP9 559 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PCDHGA4Q9Y5G9 962 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FMN2Q9NZ56 1722 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 CHD2O14647 1828 aaKnown RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PDPK1O15530 556 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PIK3CBP42338 1070 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 KHKP50053 298 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PPP1R8Q12972 351 aaKnown RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SEMA3AQ14563 771 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 GPR33Q49SQ1 333 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SMYD5Q6GMV2 418 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 HACD2Q6Y1H2 254 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 LRRC70Q7Z2Q7 622 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 TMC8Q8IU68 726 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 OR10H4Q8NGA5 316 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PRR11Q96HE9 360 aaPredicted RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SLC35G5Q96KT7 338 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 MEAF6Q9HAF1 191 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SMURF2Q9HAU4 748 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PRELID1Q9Y255 219 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 GRIP1Q9Y3R0 1128 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 PCDH7O60245 1069 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 INCA1Q0VD86 236 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FRRS1Q6ZNA5 592 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 TMEM199Q8N511 208 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 OR4F6Q8NGB9 312 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 CAMK1GQ96NX5 476 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 SLC32A1Q9H598 525 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 POPDC3Q9HBV1 291 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 CFAP97Q9P2B7 532 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 FCF1Q9Y324 198 aaKnown RBP12.57□□□□□ -0.4
COL3A1-201ENST00000304636 ATRNL1Q5VV63 1379 aa12.57□□□□□ -0.4
COL3A1-201ENST00000304636 AKAP12Q02952 1782 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 A0A1W2PRB8 838 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 LCHNA4D1U4 455 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 SYN3O14994 580 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 XPNPEP2O43895 674 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 PRKACGP22612 351 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 MAGEA8P43361 318 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 CLK3P49761 638 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 OR4F3Q6IEY1 312 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 FBXO42Q6P3S6 717 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 KLHL24Q6TFL4 600 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 ZBED6CLQ96FA7 236 aaPredicted RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 MTERF1Q99551 399 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 HTATIP2Q9BUP3 242 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 RIMKLBQ9ULI2 386 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 CMAHPQ9Y471 501 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 DAPL1A0PJW8 107 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 BOLA2-SMG1P6H3BVE0 249 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 AKAP8O43823 692 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 TPST2O60704 377 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 SLITRK5O94991 958 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 OLIG2Q13516 323 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 CRB2Q5IJ48 1285 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 C6orf141Q5SZD1 244 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 LINGO2Q7L985 606 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 OR4C6Q8NH72 309 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 POF1BQ8WVV4 589 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 SLC9A6Q92581 669 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 ITPKCQ96DU7 683 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 IL4I1Q96RQ9 567 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 FBRSL1Q9HCM7 1045 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 PLSCR1O15162 318 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 NUDT6P53370 316 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 CRISP3P54108 245 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 KLHL35Q6PF15 583 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 XKRXQ6PP77 449 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 GOLGA7Q7Z5G4 137 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 KBTBD6Q86V97 674 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 DNASE1L2Q92874 299 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 FAIMQ9NVQ4 179 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 FER1L4A9Z1Z3 1794 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 CDC7O00311 574 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 HMGB3O15347 200 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 GSTM3P21266 225 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 ADAM15Q13444 863 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 NANOGP8Q6NSW7 305 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 PAMR1Q6UXH9 720 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 NAT16Q8N8M0 369 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 TSEN15Q8WW01 171 aaKnown RBP12.56□□□□□ -0.4
COL3A1-201ENST00000304636 GATA6Q92908 595 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 HSH2DQ96JZ2 352 aa12.56□□□□□ -0.4
COL3A1-201ENST00000304636 PHOX2BQ99453 314 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms