RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PEBP1P30086 187 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 FOXL2P58012 376 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 MFAP5Q13361 173 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 ART3Q13508 389 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 POU6F1Q14863 301 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 P3H1Q32P28 736 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 FIGLAQ6QHK4 219 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 NLRP9Q7RTR0 991 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 DCUN1D3Q8IWE4 304 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PARP9Q8IXQ6 854 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 OR11G2Q8NGC1 345 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 ASZ1Q8WWH4 475 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 RELTQ969Z4 430 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 SELENOSQ9BQE4 189 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 TRIM56Q9BRZ2 755 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 RAB11FIP5Q9BXF6 653 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PLAGL1Q9UM63 463 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PCDHA3Q9Y5H8 950 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 KLF2Q9Y5W3 355 aaPredicted RBP14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 PRSS21Q9Y6M0 314 aa14.16□□□□□ -0.14
CCDC88B-201ENST00000301897 DYTNA2CJ06 578 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 FITM1A5D6W6 292 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 MROH6A6NGR9 719 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 TARM1B6A8C7 271 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 SRPX2O60687 465 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 ALOX12BO75342 701 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 JRKO75564 520 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 GAS8O95995 478 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 HPP00738 406 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 CD9P21926 228 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 RIPPLY3P57055 190 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 OCA2Q04671 838 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 SPA17Q15506 151 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 PRMT9Q6P2P2 845 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 MTFR2Q6P444 385 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 UNC5DQ6UXZ4 953 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 COX15Q7KZN9 410 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 LINC00523Q86TU6 105 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 FJX1Q86VR8 437 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 MCEMP1Q8IX19 187 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 SLC22A15Q8IZD6 547 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 OR2L8Q8NGY9 312 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 ZUFSPQ96AP4 578 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 MRFAP1L1Q96HT8 127 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 ZNF285Q96NJ3 590 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 CRB3Q9BUF7 120 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 SOX17Q9H6I2 414 aaPredicted RBP14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 SUCOQ9UBS9 1254 aaKnown RBP14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 CTSFQ9UBX1 484 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 MRFAP1Q9Y605 127 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 FAM169AQ9Y6X4 670 aa14.15□□□□□ -0.14
CCDC88B-201ENST00000301897 PCNX1Q96RV3 2341 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 TRAV17A0A0B4J275 112 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 GOLGA6L9A6NEM1 432 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 VSTM2BA6NLU5 285 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 MAP2K7O14733 419 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 PCDH17O14917 1159 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 PRF1P14222 555 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 ACPPP15309 386 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 TPH1P17752 444 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 FOXN2P32314 431 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 RWDD2BP57060 319 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 AP2B1P63010 937 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 NAA25Q14CX7 972 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 SF1Q15637 639 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 TTC23LQ6PF05 361 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 KBTBD2Q8IY47 623 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 CCDC170Q8IYT3 715 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 RAB42Q8N4Z0 105 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 LINC01555Q8NAE3 123 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 OR1N1Q8NGS0 311 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 UNKQ9C0B0 810 aaKnown RBP14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 IMPACTQ9P2X3 320 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 SLC39A10Q9ULF5 831 aa14.14□□□□□ -0.15
CCDC88B-201ENST00000301897 SETD2Q9BYW2 2564 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ERI2A8K979 691 aaKnown RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 APOA4P06727 396 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 MYBL2P10244 700 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 PTGER4P35408 488 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ARG2P78540 354 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 TBX2Q13207 712 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 TMED2Q15363 201 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF324BQ6AW86 544 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 AFTPHQ6ULP2 937 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 LINC00696Q6ZRV3 163 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 SHISA6Q6ZSJ9 500 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 TMEM151BQ8IW70 566 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 GSDMBQ8TAX9 411 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 NR4A3Q92570 626 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 MIEF2Q96C03 454 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 MAGEB10Q96LZ2 347 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 MENTQ9BUN1 341 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 CARD6Q9BX69 1037 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF304Q9HCX3 659 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 CHST11Q9NPF2 352 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 ZNF282Q9UDV7 671 aaPredicted RBP14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 RIMKLBQ9ULI2 386 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 KLHL20Q9Y2M5 609 aa14.13□□□□□ -0.15
CCDC88B-201ENST00000301897 PCDHA13Q9Y5I0 950 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms