RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PYCR3Q53H96 274 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 LIPIQ6XZB0 460 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 PARS2Q7L3T8 475 aaKnown RBP23.31■■□□□ 1.32
TRIM54-201ENST00000296098 RASGEF1AQ8N9B8 481 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 SPDYE1Q8NFV5 336 aaPredicted RBP23.31■■□□□ 1.32
TRIM54-201ENST00000296098 GLMNQ92990 594 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 TMEM159Q96B96 161 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 TSSK3Q96PN8 268 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 CAAP1Q9H8G2 361 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 ZNF639Q9UID6 485 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 MRPS23Q9Y3D9 190 aaKnown RBP23.31■■□□□ 1.32
TRIM54-201ENST00000296098 COMMD3-BMI1R4GMX3 469 aa23.31■■□□□ 1.32
TRIM54-201ENST00000296098 NUP210Q8TEM1 1887 aaPredicted RBP23.31■■□□□ 1.32
TRIM54-201ENST00000296098 ATG13O75143 517 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ERN1O75460 977 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ACPPP15309 386 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 PCSK2P16519 638 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 CTSCP53634 463 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ST8SIA6P61647 398 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 GTDC1Q4AE62 458 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 EEF1AKMT2Q5JPI9 291 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 THEMIS2Q5TEJ8 643 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 RBM44Q6ZP01 1051 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 CELF5Q8N6W0 485 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 DGCR14Q96DF8 476 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 PAIP1Q9H074 479 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 KCNH6Q9H252 994 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 RMND5AQ9H871 391 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 MAN2B2Q9Y2E5 1009 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 RWDD3Q9Y3V2 267 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 A0A096LPI6 279 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 CLOCKO15516 846 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 UGDHO60701 494 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 GNAO1P09471 354 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ZNF23P17027 643 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 RPS9P46781 194 aaKnown RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 PRLHRP49683 370 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 CHRNB3Q05901 458 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ABRQ12979 859 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 SLC36A3Q495N2 470 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 LRIF1Q5T3J3 769 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 C12orf40Q86WS4 652 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ZFAND2BQ8WV99 257 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 TESCQ96BS2 214 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 AP2M1Q96CW1 435 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 APIPQ96GX9 242 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 LRRC3BQ96PB8 259 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 OSBPL6Q9BZF3 934 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 SMPD3Q9NY59 655 aaPredicted RBP23.3■■□□□ 1.32
TRIM54-201ENST00000296098 PRKAG2Q9UGJ0 569 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 INVSQ9Y283 1065 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ITM2BQ9Y287 266 aa23.3■■□□□ 1.32
TRIM54-201ENST00000296098 ELOVL7A1L3X0 281 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 DEAF1O75398 565 aaPredicted RBP23.29■■□□□ 1.32
TRIM54-201ENST00000296098 ADH1CP00326 375 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 ETS2P15036 469 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 AMD1P17707 334 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 TACR1P25103 407 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 PHC1P78364 1004 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 IRF8Q02556 426 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 CAMK1Q14012 370 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 GRIN2CQ14957 1233 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 LIPJQ5W064 366 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 PSRC1Q6PGN9 363 aaPredicted RBP23.29■■□□□ 1.32
TRIM54-201ENST00000296098 SPRED2Q7Z698 418 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 HM13Q8TCT9 377 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 CYGBQ8WWM9 190 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 ATL1Q8WXF7 558 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 ZNF707Q96C28 371 aaPredicted RBP23.29■■□□□ 1.32
TRIM54-201ENST00000296098 ITCHQ96J02 903 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 APOLD1Q96LR9 279 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 CLK4Q9HAZ1 481 aaKnown RBP23.29■■□□□ 1.32
TRIM54-201ENST00000296098 SERHLQ9NQF3 203 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 WBP1LQ9NX94 342 aa23.29■■□□□ 1.32
TRIM54-201ENST00000296098 LINC01553A4QN01 128 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 KPNA3O00505 521 aaPredicted RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CLGNO14967 610 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 HOXC11O43248 304 aaPredicted RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 PREPP48147 710 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 ROR2Q01974 943 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 ATG9BQ674R7 924 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 THOC6Q86W42 341 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 NRSN1Q8IZ57 195 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 TMEM132CQ8N3T6 1108 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CSGALNACT1Q8TDX6 532 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CPPED1Q9BRF8 314 aaPredicted RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CCM2Q9BSQ5 444 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 UGT2B28Q9BY64 529 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 RBM38Q9H0Z9 239 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CD320Q9NPF0 282 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 SLC6A13Q9NSD5 602 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 PPT2Q9UMR5 302 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 PCDHB14Q9Y5E9 798 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 PRRC2BQ5JSZ5 2229 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 FAM220BPB1ANY3 271 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 WNT9AO14904 365 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CATP04040 527 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 ZNF33BQ06732 778 aa23.28■■□□□ 1.32
TRIM54-201ENST00000296098 CSTF3Q12996 717 aaKnown RBP23.28■■□□□ 1.32
TRIM54-201ENST00000296098 MICU2Q8IYU8 434 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms