RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ANXA5P08758 320 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 CSKP41240 450 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 CDKN2CP42773 168 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 EPS8Q12929 822 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 SPATS1Q496A3 300 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 P3H2Q8IVL5 708 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 RAVER1Q8IY67 606 aaKnown RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 TTC30BQ8N4P2 665 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 AADATQ8N5Z0 425 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 PDPRQ8NCN5 879 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 HTRA1Q92743 480 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 RPL3LQ92901 407 aaKnown RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 REXO5Q96IC2 774 aaKnown RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 C6orf62Q9GZU0 229 aaPredicted RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 RMND5AQ9H871 391 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 ERGIC3Q9Y282 383 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 CLDN9O95484 217 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 CPNE6O95741 557 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 HSMCR30P0CW71 290 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 MAGEA11P43364 429 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 PRKCZQ05513 592 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 CDK5R2Q13319 367 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 ZNF846Q147U1 533 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 TSPAN33Q86UF1 283 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 SCAIQ8N9R8 606 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 FBXO22Q8NEZ5 403 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 ISG20Q96AZ6 181 aaKnown RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 SH3YL1Q96HL8 342 aaPredicted RBP12.34□□□□□ -0.43
LIG1-201ENST00000263274 PYURFQ96I23 114 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 TPRKBQ9Y3C4 175 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 N6AMT1Q9Y5N5 214 aa12.34□□□□□ -0.43
LIG1-201ENST00000263274 GLYATL1P3A0A0U1RQE8 302 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 LOC100506127A0A0U1RQW1 187 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 FAM92AA1XBS5 289 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 TMEM88BA6NKF7 163 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 AXIN1O15169 862 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 SEC24AO95486 1093 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 HTR1AP08908 422 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 DBTP11182 482 aaKnown RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 EPHA2P29317 976 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 IDH2P48735 452 aaKnown RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 ST13P50502 369 aaKnown RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 DSC1Q08554 894 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 PCBP2Q15366 365 aaKnown RBP eCLIP12.33□□□□□ -0.438e-7■■■■■ 26.8
LIG1-201ENST00000263274 ADGRF1Q5T601 910 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 PDE12Q6L8Q7 609 aaKnown RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 GPR153Q6NV75 609 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 C17orf99Q6UX52 265 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 SYT12Q8IV01 421 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 SVOPLQ8N434 492 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 TTC29Q8NA56 475 aaPredicted RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 OR52J3Q8NH60 311 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 MTERF1Q99551 399 aaKnown RBP12.33□□□□□ -0.43
LIG1-201ENST00000263274 TTPALQ9BTX7 342 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 ABCG2Q9UNQ0 655 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 PCDHB1Q9Y5F3 818 aa12.33□□□□□ -0.43
LIG1-201ENST00000263274 KLK8O60259 260 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 MT-ND2P03891 347 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 CR2P20023 1033 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 CLCN4P51793 760 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 GRSF1Q12849 480 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG1-201ENST00000263274 DGUOKQ16854 277 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 TTLL9Q3SXZ7 439 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 UBE2R2Q712K3 238 aaPredicted RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 CEP68Q76N32 757 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 P2RY8Q86VZ1 359 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 HIPK1Q86Z02 1210 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 MSRB3Q8IXL7 192 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 SPPL2AQ8TCT8 520 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 DOK1Q99704 481 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.33□□□□□ -0.44
LIG1-201ENST00000263274 AASDHPPTQ9NRN7 309 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 KRT84Q9NSB2 600 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 PAK1IP1Q9NWT1 392 aaPredicted RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 VNN3Q9NY84 501 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 VPS51Q9UID3 782 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 TDRD15B5MCY1 1934 aaKnown RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 ANKRD28O15084 1053 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 EOMESO95936 686 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 CYBAP13498 195 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 SERPINB10P48595 397 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 DGKEP52429 567 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 PPP2R2BQ00005 443 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 ILF2Q12905 390 aaKnown RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 TUBA3CQ13748 450 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 DPY19L1Q2PZI1 675 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 RUNDC3AQ59EK9 446 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 CARD16Q5EG05 197 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 Q6ZPB1 254 aaPredicted RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 PRR23BQ6ZRT6 265 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 UTP15Q8TED0 518 aaKnown RBP12.33□□□□□ -0.44
LIG1-201ENST00000263274 FATE1Q969F0 183 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 IL26Q9NPH9 171 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 SLC22A14Q9Y267 594 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 MYO16Q9Y6X6 1858 aa12.33□□□□□ -0.44
LIG1-201ENST00000263274 PRRG1O14668 218 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 PRSS23O95084 383 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 COX7A2P14406 83 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 HPCAL1P37235 193 aa12.32□□□□□ -0.44
LIG1-201ENST00000263274 GP2P55259 537 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms