RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SCML2Q9UQR0 700 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 A0A1W2PRG6 482 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 EEFSECP57772 596 aaKnown RBP18.73■□□□□ 0.59
UPF1-201ENST00000262803 KCNC3Q14003 757 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 KCNJ11Q14654 390 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 PRSS55Q6UWB4 352 aaPredicted RBP18.73■□□□□ 0.59
UPF1-201ENST00000262803 SYVN1Q86TM6 617 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 C11orf24Q96F05 449 aaPredicted RBP18.73■□□□□ 0.59
UPF1-201ENST00000262803 MED31Q9Y3C7 131 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 RICTORQ6R327 1708 aa18.73■□□□□ 0.59
UPF1-201ENST00000262803 FAM159BA6NKW6 160 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 ANXA2P2A6NMY6 339 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PCDH7O60245 1069 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 ANXA2P07355 339 aaKnown RBP18.72■□□□□ 0.59
UPF1-201ENST00000262803 CASP9P55211 416 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 GPX6P59796 221 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 AAK1Q2M2I8 961 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PRAMEF14Q5SWL7 426 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PRAMEF13Q5VWM6 474 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 FIP1L1Q6UN15 594 aaKnown RBP18.72■□□□□ 0.59
UPF1-201ENST00000262803 ZNF554Q86TJ5 538 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 GPR65Q8IYL9 337 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PCDHAC1Q9H158 963 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PIGVQ9NUD9 493 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 OSER1Q9NX31 292 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 FAM240BA0A1B0GVZ2 78 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 RAP2AP10114 183 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 CLCN4P51793 760 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 GPR151Q8TDV0 419 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 HTRA1Q92743 480 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 ZSWIM3Q96MP5 696 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PCDH10Q9P2E7 1040 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 CLCA3PQ9Y6N3 262 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 MAGEA11P43364 429 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 OGDHQ02218 1023 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 SCN1BQ07699 218 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PUDPQ08623 228 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 SLC39A4Q6P5W5 647 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PNLDC1Q8NA58 520 aaKnown RBP18.72■□□□□ 0.59
UPF1-201ENST00000262803 EBPLQ9BY08 206 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 TRIM39Q9HCM9 518 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 CACNG4Q9UBN1 327 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PDE10AQ9Y233 779 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 ACVR2AP27037 513 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 FAM182AQ5T1J6 154 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 POMZP3Q6PJE2 187 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 LRRC46Q96FV0 321 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 PCDHB16Q9NRJ7 776 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 FKBP14Q9NWM8 211 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 NKIRAS2Q9NYR9 191 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 DUOX1Q9NRD9 1551 aa18.72■□□□□ 0.59
UPF1-201ENST00000262803 A0A1W2PRB8 838 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 TNFRSF10BO14763 440 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 AP2A2O94973 939 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 KLK3P07288 261 aaPredicted RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 ENDOUP21128 410 aaKnown RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 DGKEP52429 567 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 CYP4F8P98187 520 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 HPS1Q92902 700 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 CARS2Q9HA77 564 aaKnown RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 MAFFQ9ULX9 164 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 ARL5AQ9Y689 179 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 A0A0U1RQF3 1178 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 PGRP06401 933 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 KCNE1P15382 129 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 HOXD13P35453 343 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 NCBP2P52298 156 aaKnown RBP eCLIP18.71■□□□□ 0.591e-7■■■□□ 15.4
UPF1-201ENST00000262803 MTPNP58546 118 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 HERVK_113P63132 956 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 ZNF433Q8N7K0 673 aaPredicted RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 OR2AP1Q8NGE2 309 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 PLEKHO2Q8TD55 490 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 IRF7Q92985 503 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 B3GALT6Q96L58 329 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 JSRP1Q96MG2 331 aaPredicted RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 NDC1Q9BTX1 674 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 ERVK-6Q9BXR3 956 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 BTBD1Q9H0C5 482 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 TCF7L1Q9HCS4 588 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 UBR1Q8IWV7 1749 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 TRBV23OR9-2A0A075B6M9 112 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 METTL21EPA6NDL7 271 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 CCNHP51946 323 aaPredicted RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 IL18R1Q13478 541 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 ZNF783Q6ZMS7 281 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 P2RY8Q86VZ1 359 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 CHST4Q8NCG5 386 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 MED1Q15648 1581 aaPredicted RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 hCG_2039718K7EN88 272 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 CLUP10909 449 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 IMPDH1P20839 514 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 SLC7A1P30825 629 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 RAB43Q86YS6 212 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 IFT27Q9BW83 186 aa18.71■□□□□ 0.59
UPF1-201ENST00000262803 RC3H2Q9HBD1 1191 aaKnown RBP18.71■□□□□ 0.59
UPF1-201ENST00000262803 OR51F1A6NGY5 319 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 SEPHS1P49903 392 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 CDH12P55289 794 aa18.7■□□□□ 0.58
UPF1-201ENST00000262803 SLC25A11Q02978 314 aaKnown RBP18.7■□□□□ 0.58
UPF1-201ENST00000262803 TYSND1Q2T9J0 566 aa18.7■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 77.7 ms