RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 HOPXQ9BPY8 73 aaPredicted RBP3.51□□□□□ -1.85
SCN1A-221ENST00000641996 PINK1Q9BXM7 581 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ASPNQ9BXN1 380 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 MINDY3Q9H8M7 445 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 SLC22A7Q9Y694 548 aa3.51□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF705EA8MWA4 302 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CASKO14936 926 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MEF2AQ02078 507 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF846Q147U1 533 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LASP1Q14847 261 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HFEQ30201 348 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RFTN2Q52LD8 501 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MISPQ8IVT2 679 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TRMT2AQ8IZ69 625 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CISD2Q8N5K1 135 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ADPRHL1Q8NDY3 354 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 OR2L2Q8NH16 312 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PNKPQ96T60 521 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NPAS2Q99743 824 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MAPKAP1Q9BPZ7 522 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NPLQ9BXD5 320 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MIOXQ9UGB7 285 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 GNPTGQ9UJJ9 305 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM30Q9UKF2 790 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF862O60290 1169 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KRT33AO76009 404 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 UBOX5O94941 541 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 BAG3O95817 575 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CFIP05156 583 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ALDH9A1P49189 494 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 S100A10P60903 97 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CAP1Q01518 475 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ACER2Q5QJU3 275 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AGBL2Q5U5Z8 902 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KIAA0930Q6ICG6 404 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ELP4Q96EB1 424 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NECAB3Q96P71 396 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NAA11Q9BSU3 229 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SLC32A1Q9H598 525 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ASNSD1Q9NWL6 643 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 COPS7AQ9UBW8 275 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HAO1Q9UJM8 370 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 WDR97A6NE52 1622 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAM237BA0A1B0GVD1 139 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SH2B2O14492 632 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CLIC2O15247 247 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ADAM11O75078 769 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 APEX1P27695 318 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 IL12AP29459 219 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CRABP1P29762 137 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FMO4P31512 558 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FOXN2P32314 431 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HMGCLP35914 325 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 KCNC1P48547 511 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 AP2S1P53680 142 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SKP2Q13309 424 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM44Q2T9K0 475 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 SUPT20HL1Q3ZLR7 823 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DMRTA1Q5VZB9 504 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZFP1Q6P2D0 407 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PRMT9Q6P2P2 845 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 PLET1Q6UQ28 207 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RTN4RL1Q86UN2 441 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CPT1CQ8TCG5 803 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NINJ1Q92982 152 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 C9orf72Q96LT7 481 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 OR2M4Q96R27 311 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CEP41Q9BYV8 373 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TMEM140Q9NV12 185 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CLCA2Q9UQC9 943 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RNF215Q9Y6U7 377 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 hCG_2039718K7EN88 272 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FANCGO15287 622 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 F9P00740 461 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 OR2B11Q5JQS5 317 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 UQCC3Q6UW78 93 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 HIPK1Q86Z02 1210 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZBTB8OSQ8IWT0 167 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NKAPQ8N5F7 415 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ANKLE1Q8NAG6 615 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MTBPQ96DY7 904 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAM120BQ96EK7 910 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZDHHC15Q96MV8 337 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 NXF3Q9H4D5 531 aaKnown RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 RGCCQ9H4X1 137 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZBTB3Q9H5J0 574 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 C19orf12Q9NSK7 152 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MKLN1Q9UL63 735 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 URGCP-MRPS24S4R325 110 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 WDR64B1ANS9 1081 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 LRRTM2O43300 516 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CHP2O43745 196 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 DEXIO95424 95 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 ZNF26P17031 533 aaPredicted RBP3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MMP12P39900 470 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 TFDP1Q14186 410 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 MPPED2Q15777 294 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 CHRNA2Q15822 529 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 WDR72Q3MJ13 1102 aa3.5□□□□□ -1.85
SCN1A-221ENST00000641996 FAHD2BQ6P2I3 314 aaPredicted RBP3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms