RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 A0A1W2PQ45 241 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A0A1W2PQJ5 194 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 A0A1W2PQY0 241 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 H3BN98 237 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SHOXO15266 292 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BCAS2O75934 225 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AHSA1O95433 338 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 C9P02748 559 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 YES1P07947 543 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CYP2F1P24903 491 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RBL1P28749 1068 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GRM5P41594 1212 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GNG2P59768 71 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MALLQ13021 153 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MYBPHQ13203 477 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLBPQ14493 270 aaKnown RBP eCLIP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GRM4Q14833 912 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ANGEL2Q5VTE6 544 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GLYCTKQ8IVS8 523 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GLIS3Q8NEA6 775 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ADCY4Q8NFM4 1077 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CPT1CQ8TCG5 803 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 STK32AQ8WU08 396 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DAZLQ92904 295 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NXNL1Q96CM4 212 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 APBA2Q99767 749 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CIB1Q99828 191 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GALNT9Q9HCQ5 603 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 THSD1Q9NS62 852 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RNF146Q9NTX7 359 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM49BQ9NUQ9 324 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ACTR3BQ9P1U1 418 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CDH9Q9ULB4 789 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SALL1Q9NSC2 1324 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 IQGAP1P46940 1657 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ILVBLA1L0T0 632 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PDLIM1O00151 329 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SCAF4O95104 1147 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PNPP00491 289 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MAPTP10636 758 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PTPN2P17706 415 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CD58P19256 250 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 BCL2A1Q16548 175 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 C11orf91Q3C1V1 193 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MINDY4Q4G0A6 757 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AARDQ4LEZ3 155 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 HENMT1Q5T8I9 393 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CTU1Q7Z7A3 348 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MCATQ8IVS2 390 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MB21D2Q8IYB1 491 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NLGN4YQ8NFZ3 816 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CD300LFQ8TDQ1 290 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PIGKQ92643 395 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NACC2Q96BF6 587 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 VAT1Q99536 393 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PELOQ9BRX2 385 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ELP3Q9H9T3 547 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TUBG2Q9NRH3 451 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 AGPAT3Q9NRZ7 376 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF226Q9NYT6 803 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRDM4Q9UKN5 801 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PSMD13Q9UNM6 376 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLAGL2Q9UPG8 496 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 IQGAP3Q86VI3 1631 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SAMD9LQ8IVG5 1584 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 INO80Q9ULG1 1556 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PPP1R2P9O14990 202 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLIN3O60664 434 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CLPXO76031 633 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 IFNA17P01571 189 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PNLIPRP1P54315 467 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PRKAA2P54646 552 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ARSFP54793 590 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 LSM3P62310 102 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RAB31Q13636 194 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLEKHN1Q494U1 663 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 RAET1GQ6H3X3 334 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 C3orf67Q6ZVT6 689 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NUDT10Q8NFP7 164 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 OR5L1Q8NGL2 311 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ITFG1Q8TB96 612 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 NUDT11Q96G61 164 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 SLC2A13Q96QE2 648 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MIPEPQ99797 713 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DCTPP1Q9H773 170 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GTF3C4Q9UKN8 822 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TIMM8BQ9Y5J9 83 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 QRICH2Q9H0J4 1663 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CEP152O94986 1710 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 FAM149AA5PLN7 773 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 CLDN25C9JDP6 229 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 POLR1CO15160 346 aaPredicted RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 COQ9O75208 318 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 DUSP11O75319 330 aaKnown RBP2.73□□□□□ -1.97
SCN1A-219ENST00000641575 PLATP00750 562 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 TFPIP10646 304 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 ETS2P15036 469 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GADD45AP24522 165 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 GCH1P30793 250 aa2.73□□□□□ -1.97
SCN1A-219ENST00000641575 MRPS5P82675 430 aaKnown RBP2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms