RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 CD9P21926 228 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 AOAHP28039 575 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 PRAMEP78395 509 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 GRB7Q14451 532 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 SLC9A5Q14940 896 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 SEL1L2Q5TEA6 688 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 SLC13A5Q86YT5 568 aaPredicted RBP17.76■□□□□ 0.43
CLN6-220ENST00000637450 GALNT16Q8N428 558 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 CLEC1AQ8NC01 280 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 LKAAEAR1Q8TD35 194 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 C1orf54Q8WWF1 131 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 NDC1Q9BTX1 674 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 SLC22A11Q9NSA0 550 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 IRAK4Q9NWZ3 460 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 P4HTMQ9NXG6 502 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 KLHL20Q9Y2M5 609 aa17.76■□□□□ 0.43
CLN6-220ENST00000637450 TCP11X1B4DZS4 312 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 SLCO2B1O94956 709 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 RPN2P04844 631 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 UMODP07911 640 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 ATXN8OSP0DMR3 200 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 SOX8P57073 446 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 FOXL2P58012 376 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 MYBPC3Q14896 1274 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 PLEKHN1Q494U1 663 aaPredicted RBP17.75■□□□□ 0.43
CLN6-220ENST00000637450 IGFL3Q6UXB1 125 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 UNC5DQ6UXZ4 953 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 PPP1R32Q7Z5V6 425 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 LDB1Q86U70 411 aaPredicted RBP17.75■□□□□ 0.43
CLN6-220ENST00000637450 MCATQ8IVS2 390 aaKnown RBP17.75■□□□□ 0.43
CLN6-220ENST00000637450 LMNTD1Q8N9Z9 388 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 CFAP61Q8NHU2 1237 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 UBE2Q2Q8WVN8 375 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 SLC22A18Q96BI1 424 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 ZNF552Q9H707 407 aaPredicted RBP17.75■□□□□ 0.43
CLN6-220ENST00000637450 CHRAC1Q9NRG0 131 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 ANAPC5Q9UJX4 755 aa17.75■□□□□ 0.43
CLN6-220ENST00000637450 SHANK1Q9Y566 2161 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 PRMT5O14744 637 aaPredicted RBP17.74■□□□□ 0.43
CLN6-220ENST00000637450 SEMA7AO75326 666 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ONECUT2O95948 504 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 S1PR4O95977 384 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 APOA4P06727 396 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 APRTP07741 180 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ALAS2P22557 587 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ARSFP54793 590 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 SNX1Q13596 522 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 AARS2Q5JTZ9 985 aaKnown RBP17.74■□□□□ 0.43
CLN6-220ENST00000637450 PCID2Q5JVF3 399 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 GAS2L3Q86XJ1 694 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 TMEM151BQ8IW70 566 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 DCUN1D3Q8IWE4 304 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 KRT222Q8N1A0 295 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 C2orf73Q8N5S3 287 aaPredicted RBP17.74■□□□□ 0.43
CLN6-220ENST00000637450 PPHLN1Q8NEY8 458 aaKnown RBP17.74■□□□□ 0.43
CLN6-220ENST00000637450 OR2L8Q8NGY9 312 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 DLG3Q92796 817 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 C19orf60Q96EN9 201 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 IL17FQ96PD4 163 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ENAMQ9NRM1 1142 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 CATSPERZQ9NTU4 200 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 PAK5Q9P286 719 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 MARCH4Q9P2E8 410 aaPredicted RBP17.74■□□□□ 0.43
CLN6-220ENST00000637450 CIDEBQ9UHD4 219 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ICE1Q9Y2F5 2266 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 ESPL1Q14674 2120 aa17.74■□□□□ 0.43
CLN6-220ENST00000637450 MASP2O00187 686 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 RASGRF2O14827 1237 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 CD3EAPO15446 510 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 KLHL41O60662 606 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 ALPPP05187 535 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 ZSCAN5DPP0CG00 497 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 ITGAXP20702 1163 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 RPL22P35268 128 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 TTPAP49638 278 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 MRPL49Q13405 166 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 EIF2S3LQ2VIR3 472 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 C4orf17Q53FE4 359 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 FCRL6Q6DN72 434 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 FIGLAQ6QHK4 219 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 TTLL10Q6ZVT0 673 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 CCDC89Q8N998 374 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 DENND1AQ8TEH3 1009 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 SSC4DQ8WTU2 575 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 NACC2Q96BF6 587 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 SNRNP40Q96DI7 357 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 SLC29A3Q9BZD2 475 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 P2RY12Q9H244 342 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 ATP13A2Q9NQ11 1180 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 INTS7Q9NVH2 962 aaKnown RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 CUEDC1Q9NWM3 386 aaPredicted RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 PLEKHB1Q9UF11 243 aaPredicted RBP17.73■□□□□ 0.43
CLN6-220ENST00000637450 B3GNT3Q9Y2A9 372 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 FER1L5A0AVI2 2057 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 NOTCH2Q04721 2471 aa17.73■□□□□ 0.43
CLN6-220ENST00000637450 TEX15Q9BXT5 2789 aa17.72■□□□□ 0.43
CLN6-220ENST00000637450 A0A1B0GX78 115 aa17.72■□□□□ 0.43
CLN6-220ENST00000637450 PRICKLE3O43900 615 aaPredicted RBP17.72■□□□□ 0.43
CLN6-220ENST00000637450 GRIA3P42263 894 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms