RNA–Protein interactions for RNA: ENST00000637325.1

PNKP-228, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 100 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-228ENST00000637325 OR2L8Q8NGY9 312 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 GABPB2Q8TAK5 448 aaPredicted RBP13.32□□□□□ -0.28
PNKP-228ENST00000637325 APOBEC4Q8WW27 367 aaKnown RBP13.32□□□□□ -0.28
PNKP-228ENST00000637325 SEC14L1Q92503 715 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 SIGLEC10Q96LC7 697 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 RUNDC3BQ96NL0 473 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 CHST8Q9H2A9 424 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 ACTL8Q9H568 366 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 AKIRIN1Q9H9L7 192 aaPredicted RBP13.32□□□□□ -0.28
PNKP-228ENST00000637325 FAM60AQ9NP50 221 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 FBXO6Q9NRD1 293 aaPredicted RBP13.32□□□□□ -0.28
PNKP-228ENST00000637325 PCYOX1Q9UHG3 505 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 POLHQ9Y253 713 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 FARSAQ9Y285 508 aaKnown RBP13.32□□□□□ -0.28
PNKP-228ENST00000637325 NFS1Q9Y697 457 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 SAR1BQ9Y6B6 198 aa13.32□□□□□ -0.28
PNKP-228ENST00000637325 HELZ2Q9BYK8 2649 aaKnown RBP13.31□□□□□ -0.28
PNKP-228ENST00000637325 ZCWPW2A0A1B0GU75 182 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 ZNF749O43361 778 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 OR2B3O76000 313 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 C1orf105O95561 183 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 S1PR4O95977 384 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 RECKO95980 971 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 MAGEA3P43357 314 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 CTBP1Q13363 440 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 SF1Q15637 639 aaKnown RBP13.31□□□□□ -0.28
PNKP-228ENST00000637325 ZIC1Q15915 447 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 DEFB110Q30KQ9 67 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 TTLL9Q3SXZ7 439 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 PAPD7Q5XG87 772 aaKnown RBP13.31□□□□□ -0.28
PNKP-228ENST00000637325 DENND6AQ8IWF6 608 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 FAM20CQ8IXL6 584 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 LMNTD2Q8IXW0 634 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 LMNTD1Q8N9Z9 388 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 SLC38A9Q8NBW4 561 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.31□□□□□ -0.28
PNKP-228ENST00000637325 FLVCR1-AS1Q8TAF5 88 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 RUFY1Q96T51 708 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 CHRNA10Q9GZZ6 450 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 SLC25A18Q9H1K4 315 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 PYCARDQ9ULZ3 195 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 RUVBL2Q9Y230 463 aaKnown RBP13.31□□□□□ -0.28
PNKP-228ENST00000637325 AP1M2Q9Y6Q5 423 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 BOD1L1Q8NFC6 3051 aa13.31□□□□□ -0.28
PNKP-228ENST00000637325 TNRC6AQ8NDV7 1962 aaKnown RBP13.31□□□□□ -0.28
PNKP-228ENST00000637325 F7P08709 466 aaPredicted RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 PLA2G2AP14555 144 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 PGAM1P18669 254 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 AGXTP21549 392 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 ATP5DP30049 168 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SLC1A2P43004 574 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 PTGIRP43119 386 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 RPS18P62269 152 aaKnown RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 DR1Q01658 176 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 GRB7Q14451 532 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 ACSBG2Q5FVE4 666 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 ZNF789Q5FWF6 425 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SYDE1Q6ZW31 735 aaPredicted RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 PRICKLE2Q7Z3G6 844 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SYVN1Q86TM6 617 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 KCNMB4Q86W47 210 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 CREG2Q8IUH2 290 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SYTL1Q8IYJ3 562 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 AGGF1Q8N302 714 aaeCLIP13.3□□□□□ -0.28
PNKP-228ENST00000637325 LINC01555Q8NAE3 123 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SLCO2A1Q92959 643 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 FAM167BQ9BTA0 163 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 MENTQ9BUN1 341 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 SPRTNQ9H040 489 aaPredicted RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 IARS2Q9NSE4 1012 aaKnown RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 STARD5Q9NSY2 213 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 PCMTD2Q9NV79 361 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 TUBD1Q9UJT1 453 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 FBXO5Q9UKT4 447 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 PLCL2Q9UPR0 1127 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 MAN2B2Q9Y2E5 1009 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 KLHL20Q9Y2M5 609 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 FAM169AQ9Y6X4 670 aa13.3□□□□□ -0.28
PNKP-228ENST00000637325 GCN1Q92616 2671 aaKnown RBP13.3□□□□□ -0.28
PNKP-228ENST00000637325 C9J4A7 227 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 SLC28A2O43868 658 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 TTC4O95801 387 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 FURINP09958 794 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 RAB40ALP0C0E4 278 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 ATXN8OSP0DMR3 200 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 MAGP20916 626 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 RORAP35398 523 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 MPP1Q00013 466 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 DHX9Q08211 1270 aaKnown RBP13.29□□□□□ -0.28
PNKP-228ENST00000637325 KLHL38Q2WGJ6 581 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 PTCHD3Q3KNS1 767 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 BBS9Q3SYG4 887 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 CCSMST1Q4G0I0 132 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 HSP90AA5PQ58FG0 334 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 LCN10Q6JVE6 187 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 TLDC1Q6P9B6 456 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 DNAJC22Q8N4W6 341 aa13.29□□□□□ -0.28
PNKP-228ENST00000637325 ZNF655Q8N720 491 aaPredicted RBP13.29□□□□□ -0.28
PNKP-228ENST00000637325 ENDOVQ8N8Q3 282 aaKnown RBP13.29□□□□□ -0.28
PNKP-228ENST00000637325 C9orf43Q8TAL5 461 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms