RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ACTRT2Q8TDY3 377 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 C19orf60Q96EN9 201 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 HSPA12BQ96MM6 686 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 TBC1D29Q9UFV1 150 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 TRPS1Q9UHF7 1281 aa17.89■□□□□ 0.45
CLN3-254ENST00000637050 PDZK1P1A8MUH7 402 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 MEI4A8MW99 385 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 MAP3K13O43283 966 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 WNT1P04628 370 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 CAPN1P07384 714 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 TDGF1P13385 188 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 HGFP14210 728 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 AK4P27144 223 aaPredicted RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 CD38P28907 300 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 ARL1P40616 181 aaPredicted RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 PNLIPRP1P54315 467 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 RACK1P63244 317 aaKnown RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 FAM91A1Q658Y4 838 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 DUS1LQ6P1R4 473 aaKnown RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 IQCHQ86VS3 1027 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 SYTL1Q8IYJ3 562 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 RGL4Q8IZJ4 473 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 PPFIBP2Q8ND30 876 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 CCL4L1Q8NHW4 92 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 C1orf216Q8TAB5 229 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 MED8Q96G25 268 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 PRR11Q96HE9 360 aaPredicted RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 OR4K3Q96R72 315 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 SGPP1Q9BX95 441 aa17.88■□□□□ 0.45
CLN3-254ENST00000637050 DUSP15Q9H1R2 295 aaPredicted RBP17.88■□□□□ 0.45
CLN3-254ENST00000637050 E7ENX8 843 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PIP5K1BO14986 540 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 CLDN9O95484 217 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 CHEK2O96017 543 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 MAOBP27338 520 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TAP2Q03519 686 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PCDH1Q08174 1060 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PRKG2Q13237 762 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 ARHGAP19Q14CB8 494 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 RPE65Q16518 533 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TJAP1Q5JTD0 557 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 CAPN13Q6MZZ7 669 aaPredicted RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 TSSK4Q6SA08 328 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 NRROSQ86YC3 692 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 HOMEZQ8IX15 550 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 L3MBTL4Q8NA19 623 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 CEP70Q8NHQ1 597 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 METTL6Q8TCB7 284 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 GPBAR1Q8TDU6 330 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 C3orf30Q96M34 536 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 FERD3LQ96RJ6 166 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 MENTQ9BUN1 341 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 MVB12BQ9H7P6 319 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 SAR1AQ9NR31 198 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 SCHIP1Q9P0W5 487 aaPredicted RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 KLF15Q9UIH9 416 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TDRKHQ9Y2W6 561 aaKnown RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 RNF11Q9Y3C5 154 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 A6NCN8 305 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 E9PBE3 544 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 KLHL41O60662 606 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PRAMEF4O60810 478 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 KIAA0754O94854 1291 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 HSD17B2P37059 387 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 ACTR1BP42025 376 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 HALP42357 657 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 HNRNPH2P55795 449 aaKnown RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 ACTR1AP61163 376 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TBPL1P62380 186 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 ILF3Q12906 894 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-254ENST00000637050 GGTA1PQ4G0N0 100 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 LACTB2Q53H82 288 aaPredicted RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 PRAMEF9Q5VWM5 478 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 LARP4Q71RC2 724 aaKnown RBP eCLIP17.87■□□□□ 0.45
CLN3-254ENST00000637050 PARGQ86W56 976 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TMEFF1Q8IYR6 380 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 DNASE2BQ8WZ79 361 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 CCT7Q99832 543 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 SLC29A3Q9BZD2 475 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 ACTR8Q9H981 624 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TM9SF3Q9HD45 589 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 IMP3Q9NV31 184 aaKnown RBP17.87■□□□□ 0.45
CLN3-254ENST00000637050 SPATA7Q9P0W8 599 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 POLG2Q9UHN1 485 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PLAGL1Q9UM63 463 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 TRIM33Q9UPN9 1127 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 BTRCQ9Y297 605 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 PTGDR2Q9Y5Y4 395 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 HEBP2Q9Y5Z4 205 aa17.87■□□□□ 0.45
CLN3-254ENST00000637050 KCNE1BA0A087WTH5 132 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 OR52A4PA6NMU1 304 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 UGDHO60701 494 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 EML2O95834 649 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 MTHFD1P11586 935 aaKnown RBP17.86■□□□□ 0.45
CLN3-254ENST00000637050 FNTBP49356 437 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 BNIP1Q12981 228 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 CYP2A13Q16696 494 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 NXNQ6DKJ4 435 aa17.86■□□□□ 0.45
CLN3-254ENST00000637050 SLC30A9Q6PML9 568 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms