RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 TMEM132CQ8N3T6 1108 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 SMYD1Q8NB12 490 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 GPR26Q8NDV2 337 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 NETO1Q8TDF5 533 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 FAM120BQ96EK7 910 aaKnown RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 REXO5Q96IC2 774 aaKnown RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 ADNPQ9H2P0 1102 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 RMND5AQ9H871 391 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 TBC1D23Q9NUY8 699 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 TMEFF2Q9UIK5 374 aaPredicted RBP12.46□□□□□ -0.42
LINC00540-203ENST00000631321 PSME2Q9UL46 239 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 PPIL1Q9Y3C6 166 aa12.46□□□□□ -0.42
LINC00540-203ENST00000631321 IGLV3-16A0A075B6K0 115 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 LOC100130705A0A1B0GUX0 176 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PER2O15055 1255 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 NOBOXO60393 691 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 IGSF6O95976 241 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SERPINA1P01009 418 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SOD2P04179 222 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ITGAMP11215 1152 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MAP4P27816 1152 aaKnown RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 RYKP34925 604 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 RPIAP49247 311 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ABHD18Q0P651 414 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 BNIP3Q12983 259 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MEP1AQ16819 746 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CRTC1Q6UUV9 634 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 TSPAN33Q86UF1 283 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 EGFL6Q8IUX8 553 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 C10orf111Q8N326 155 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 BEND7Q8N7W2 519 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 L3MBTL4Q8NA19 623 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CLHC1Q8NHS4 586 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PXYLP1Q8TE99 480 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SGCDQ92629 289 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MUL1Q969V5 352 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF566Q969W8 418 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CMTM7Q96FZ5 175 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PYURFQ96I23 114 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SLC12A9Q9BXP2 914 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PARVBQ9HBI1 364 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PALMDQ9NP74 551 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 LTB4R2Q9NPC1 389 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ABCB8Q9NUT2 735 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 TMED5Q9Y3A6 229 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CXorf51AA0A1B0GTR3 108 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 NPIPB15A6NHN6 443 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 FOXD2O60548 495 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF182P17025 639 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ITIH1P19827 911 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SERPINA4P29622 427 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SLC6A12P48065 614 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 PLA2G16P53816 162 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 B4GALNT1Q00973 533 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CPSF6Q16630 551 aaKnown RBP eCLIP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ANKDD1AQ495B1 522 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 DGKKQ5KSL6 1271 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MPP7Q5T2T1 576 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ANKRD34AQ69YU3 496 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 DUS1LQ6P1R4 473 aaKnown RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 TPRG1Q6ZUI0 275 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 DET1Q7L5Y6 550 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 DCP2Q8IU60 420 aaKnown RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ZC3H7AQ8IWR0 971 aaKnown RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ARL14EPQ8N8R7 260 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MIPOL1Q8TD10 442 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 NCLNQ969V3 563 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 FKBP10Q96AY3 582 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 GABARAPL1Q9H0R8 117 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ZNF334Q9HCZ1 680 aaPredicted RBP12.45□□□□□ -0.42
LINC00540-203ENST00000631321 ARL15Q9NXU5 204 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 SNX6Q9UNH7 406 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 CPQQ9Y646 472 aa12.45□□□□□ -0.42
LINC00540-203ENST00000631321 MAGEB3O15480 346 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 CXCL10P02778 98 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 C8GP07360 202 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 AOAHP28039 575 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 HOXD10P28358 340 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 MAPK1P28482 360 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 CCR7P32248 378 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 LMAN2Q12907 356 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 RAB33AQ14088 237 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 ZXDCQ2QGD7 858 aaPredicted RBP12.44□□□□□ -0.42
LINC00540-203ENST00000631321 SHQ1Q6PI26 577 aaKnown RBP12.44□□□□□ -0.42
LINC00540-203ENST00000631321 XKR5Q6UX68 686 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 PGBD3Q8N328 593 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 ELMOD1Q8N336 334 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 CPXM2Q8N436 756 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 ARL10Q8N8L6 244 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 BPIFB6Q8NFQ5 453 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 OR2AP1Q8NGE2 309 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 SELENOMQ8WWX9 145 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 ECHDC3Q96DC8 303 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 SCRN2Q96FV2 425 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 FCRL1Q96LA6 429 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 CSF3RQ99062 836 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 COPS8Q99627 209 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 INPP5KQ9BT40 448 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 IL21Q9HBE4 155 aa12.44□□□□□ -0.42
LINC00540-203ENST00000631321 DNAAF2Q9NVR5 837 aaKnown RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms