RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 CCDC138Q96M89 665 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 NRTNQ99748 197 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 MENTQ9BUN1 341 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 SCNM1Q9BWG6 230 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 VPS11Q9H270 941 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 NMRAL1Q9HBL8 299 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 ACTR10Q9NZ32 417 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 PDP2Q9P2J9 529 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 POMT2Q9UKY4 750 aa18.5■□□□□ 0.55
SQSTM1-216ENST00000626660 CCDC187A0A096LP49 1063 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 KRT87PA6NCN2 255 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 SMIM23A6NLE4 172 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 A8MU76 341 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 ISM1B1AKI9 464 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 CDC7O00311 574 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 HGSO14964 777 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TOX3O15405 576 aaPredicted RBP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TOP3BO95985 862 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 CD1DP15813 335 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 CSTF2P33240 577 aaKnown RBP eCLIP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TSNQ15631 228 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 CYP2A13Q16696 494 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 PHKG1Q16816 387 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 FAM83EQ2M2I3 478 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 FBXO38Q6PIJ6 1188 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 PRSS42Q7Z5A4 293 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TAX1BP1Q86VP1 789 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TDRPQ86YL5 185 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 SYTL1Q8IYJ3 562 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 SPATA6LQ8N4H0 392 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 LINC01555Q8NAE3 123 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 HMGCLL1Q8TB92 370 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 DENND1AQ8TEH3 1009 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 SMPDL3AQ92484 453 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 DLG3Q92796 817 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TSNARE1Q96NA8 513 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 UNKQ9C0B0 810 aaKnown RBP18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 ARL15Q9NXU5 204 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 TBK1Q9UHD2 729 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 KLK13Q9UKR3 277 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 ANGPTL2Q9UKU9 493 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 NEUROG3Q9Y4Z2 214 aa18.49■□□□□ 0.55
SQSTM1-216ENST00000626660 EPG5Q9HCE0 2579 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 CDH16O75309 829 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SNRNP200O75643 2136 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SLC16A8O95907 504 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 ANKRD34CP0C6C1 535 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 UGT2B7P16662 529 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 CDH3P22223 829 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 MAGEA12P43365 314 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SLCO1A2P46721 670 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 KPNA2P52292 529 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 PNLIPRP1P54315 467 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 PPP1CAP62136 330 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 EIF3IQ13347 325 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 TSTA3Q13630 321 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 RASA2Q15283 850 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 KLC3Q6P597 504 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SPESP1Q6UW49 350 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SBSNQ6UWP8 590 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 TIFABQ6ZNK6 161 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 ARHGAP22Q7Z5H3 698 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 MARCH9Q86YJ5 346 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 CARFQ8N187 725 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 C2orf73Q8N5S3 287 aaPredicted RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 AGBL5Q8NDL9 886 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 RCBTB1Q8NDN9 531 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 EPS8L3Q8TE67 593 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 KCTD4Q8WVF5 259 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 ATL1Q8WXF7 558 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 CABS1Q96KC9 395 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 CMKLR1Q99788 373 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 SPHK1Q9NYA1 384 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 UTP6Q9NYH9 597 aaKnown RBP18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 IKZF3Q9UKT9 509 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 OARD1Q9Y530 152 aa18.48■□□□□ 0.55
SQSTM1-216ENST00000626660 KMT2BQ9UMN6 2715 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 TLDC2A0PJX2 215 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 CTIFO43310 598 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 KIF1CO43896 1103 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 ERGP11308 486 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 TFEBP19484 476 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 SPINK2P20155 84 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 OAS2P29728 719 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 PRDX3P30048 256 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 RPA3P35244 121 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 ARL4DP49703 201 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 CSRP3P50461 194 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 IRF9Q00978 393 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 SLC5A12Q1EHB4 618 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 RAB11FIP2Q7L804 512 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 GPSM1Q86YR5 675 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 RIBC1Q8N443 379 aaPredicted RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 MYRIPQ8NFW9 859 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 OR2W6PQ8NHA6 318 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 WDR36Q8NI36 951 aaKnown RBP18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 ZNF480Q8WV37 535 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 KIAA1191Q96A73 305 aa18.47■□□□□ 0.55
SQSTM1-216ENST00000626660 NXNL1Q96CM4 212 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms