RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CCDC38Q502W7 563 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 DCAF10Q5QP82 559 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 LCN10Q6JVE6 187 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 IGFL3Q6UXB1 125 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 SLC13A5Q86YT5 568 aaPredicted RBP11.48□□□□□ -0.57
UPF3B-204ENST00000619445 IQCKQ8N0W5 287 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 DNAJC22Q8N4W6 341 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 MAGEC3Q8TD91 643 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 IL22Q9GZX6 179 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 KLHL25Q9H0H3 589 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 WDR54Q9H977 334 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 FAM60AQ9NP50 221 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CASS4Q9NQ75 786 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 RAB6BQ9NRW1 208 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CATSPERZQ9NTU4 200 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PIH1D1Q9NWS0 290 aaKnown RBP11.48□□□□□ -0.57
UPF3B-204ENST00000619445 NXT1Q9UKK6 140 aaKnown RBP11.48□□□□□ -0.57
UPF3B-204ENST00000619445 SLC39A10Q9ULF5 831 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PTRH2Q9Y3E5 179 aaKnown RBP11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PRSS21Q9Y6M0 314 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 PCM1Q15154 2024 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 CCDC88CQ9P219 2028 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 UNC79Q9P2D8 2635 aa11.48□□□□□ -0.57
UPF3B-204ENST00000619445 DOPEY1Q5JWR5 2465 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 OR51F1A6NGY5 319 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 TARM1B6A8C7 271 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 SLCO2B1O94956 709 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 DDAH2O95865 285 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 CCNFP41002 786 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 CDK16Q00536 496 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 GRM7Q14831 915 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 INPP5JQ15735 1006 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 FAM214AQ32MH5 1076 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 PCID2Q5JVF3 399 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 IRAK1BP1Q5VVH5 260 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 SLC6A19Q695T7 634 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 PTRHD1Q6GMV3 140 aaKnown RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 DRICH1Q6PGQ1 229 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 TRIM73Q86UV7 250 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 TMEM139Q8IV31 216 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 GALNT16Q8N428 558 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 ZNF655Q8N720 491 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 OR2L8Q8NGY9 312 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 FLVCR1-AS1Q8TAF5 88 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 ZUFSPQ96AP4 578 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 RAD51AP1Q96B01 352 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 FOPNLQ96NB1 174 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 NUDT9Q9BW91 350 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 RBSNQ9H1K0 784 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 MRM3Q9HC36 420 aaKnown RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 ATP13A2Q9NQ11 1180 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 ENAMQ9NRM1 1142 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 HOMER3Q9NSC5 361 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 SPHK1Q9NYA1 384 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 EURLQ9NYK6 297 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 BFARQ9NZS9 450 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.47□□□□□ -0.57
UPF3B-204ENST00000619445 GNPTGQ9UJJ9 305 aa11.47□□□□□ -0.57
UPF3B-204ENST00000619445 A0A1B0GX78 115 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 TCRBV7S2A1N4TA0A589 114 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 A6NL46 340 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 H3BMM5 538 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CD3EAPO15446 510 aaKnown RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 OR1I1O60431 355 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 SRPX2O60687 465 aaPredicted RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 ONECUT2O95948 504 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CBSLP0DN79 551 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 AOAHP28039 575 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CCR7P32248 378 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CBSP35520 551 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 NPY2RP49146 381 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 AIMP2Q13155 320 aaKnown RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 RPS6KA1Q15418 735 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 ZIC1Q15915 447 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CCNG2Q16589 344 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 RNF187Q5TA31 235 aaPredicted RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 MRPL14Q6P1L8 145 aaKnown RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 OTOAQ7RTW8 1153 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 ZADH2Q8N4Q0 377 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 TAB3Q8N5C8 712 aaPredicted RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 TTC29Q8NA56 475 aaPredicted RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 SSC4DQ8WTU2 575 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 ATG4AQ8WYN0 398 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 DESI2Q9BSY9 194 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 SPRTNQ9H040 489 aaPredicted RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 SLC26A1Q9H2B4 701 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 P4HTMQ9NXG6 502 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 DRG1Q9Y295 367 aaKnown RBP11.46□□□□□ -0.57
UPF3B-204ENST00000619445 B3GNT3Q9Y2A9 372 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 VPS9D1Q9Y2B5 631 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CAPN6Q9Y6Q1 641 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 FAM169AQ9Y6X4 670 aa11.46□□□□□ -0.57
UPF3B-204ENST00000619445 CENPEQ02224 2701 aa11.46□□□□□ -0.58
UPF3B-204ENST00000619445 NUP210LQ5VU65 1888 aa11.46□□□□□ -0.58
UPF3B-204ENST00000619445 POLEQ07864 2286 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 BLACEA4D250 179 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 AGPSO00116 658 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 RASGRF2O14827 1237 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 DSCR3O14972 297 aa11.45□□□□□ -0.58
UPF3B-204ENST00000619445 PHF2O75151 1096 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms