RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 GALNT5Q7Z7M9 940 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PIM3Q86V86 326 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PLCZ1Q86YW0 608 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 LIX1LQ8IVB5 337 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 OR8H2Q8N162 312 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TTC29Q8NA56 475 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 OR5H6Q8NGV6 325 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ZFAND1Q8TCF1 268 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 NCLNQ969V3 563 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 VPS35Q96QK1 796 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ZBTB18Q99592 522 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 LPIN3Q9BQK8 851 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 COPS4Q9BT78 406 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 C1QTNF3Q9BXJ4 246 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ARNT2Q9HBZ2 717 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PRDM5Q9NQX1 630 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 OR12D3Q9UGF7 316 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 FBXO10Q9UK96 956 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 NUP50Q9UKX7 468 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TBC1D24Q9ULP9 559 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 INVSQ9Y283 1065 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF638Q14966 1978 aaKnown RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 LRRC14BA6NHZ5 514 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CDK2AP1O14519 115 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 STX16O14662 325 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 STX7O15400 261 aaKnown RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TREHO43280 583 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 MITFO75030 526 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF37AP17032 561 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PFKLP17858 780 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 AKT1P31749 480 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 IL12RB1P42701 662 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CHRNA4P43681 627 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CLCN3P51790 818 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 TLE2Q04725 743 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 PON2Q15165 354 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 C5orf22Q49AR2 442 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 KDM4DQ6B0I6 523 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF549Q6P9A3 640 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 SYVN1Q86TM6 617 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CYP4Z1Q86W10 505 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 P3H2Q8IVL5 708 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 APPL2Q8NEU8 664 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 OR10A6Q8NH74 314 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 NDRG1Q92597 394 aaKnown RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 KIAA1191Q96A73 305 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CELF6Q96J87 481 aaKnown RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 CEP295NLQ96MC4 621 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 DUSP16Q9BY84 665 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 C3orf14Q9HBI5 128 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.58□□□□□ -0.72
UPF3A-212ENST00000619079 U3KQV3 271 aa10.58□□□□□ -0.72
UPF3A-212ENST00000619079 A0A075B6Q4 140 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 C12orf71A8MTZ7 269 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 PLK4O00444 970 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 ANKRD28O15084 1053 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 MUSKO15146 869 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 MATN3O15232 486 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SSX4O60224 188 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 NOS1APO75052 506 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 CYP4B1P13584 511 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 ARF4P18085 180 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SERPINH1P50454 418 aaKnown RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TAGLNQ01995 201 aaKnown RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 ESCO2Q56NI9 601 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TIGD3Q6B0B8 471 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TIGD7Q6NT04 549 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 OR56A4Q8NGH8 313 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 OR6P1Q8NGX9 317 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SLC13A3Q8WWT9 602 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SLC39A13Q96H72 371 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SPATA17Q96L03 361 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 MRGPRX2Q96LB1 330 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 PITX2Q99697 317 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TRAF4Q9BUZ4 470 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 DDIT4Q9NX09 232 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 PRKAG2Q9UGJ0 569 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 DNMT3LQ9UJW3 386 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 RNF112Q9ULX5 631 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SHROOM3Q8TF72 1996 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 LOC100506127A0A0U1RQW1 187 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 A8MV72 311 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 M0R082 166 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 DFFAO00273 331 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 ZNF780AO75290 641 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 CREG1O75629 220 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 NPR3P17342 541 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 CA5AP35218 305 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 MAGEA2P43356 314 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 IL1RL1Q01638 556 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SMN1Q16637 294 aaKnown RBP10.57□□□□□ -0.72
UPF3A-212ENST00000619079 AAK1Q2M2I8 961 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 IL31Q6EBC2 164 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 LAIR1Q6GTX8 287 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 UBE2Q1Q7Z7E8 422 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 TCTE3Q8IZS6 198 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 CDYL2Q8N8U2 506 aa10.57□□□□□ -0.72
UPF3A-212ENST00000619079 SLC43A3Q8NBI5 491 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms