RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 SPDYE7PQ495Y7 208 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TPRG1LQ5T0D9 272 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 ZNF583Q96ND8 569 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 OSBPL10Q9BXB5 764 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 NPPAP01160 153 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 RPL17P18621 184 aaKnown RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 RGRP47804 291 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 SPATS1Q496A3 300 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 XKR6Q5GH73 641 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 HECTD3Q5T447 861 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 OR8J3Q8NGG0 315 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 DUS3LQ96G46 650 aaKnown RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 POPDC3Q9HBV1 291 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 GPBP1L1Q9HC44 474 aaPredicted RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 CDH7Q9ULB5 785 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CENPXA8MT69 81 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TNFRSF11BO00300 401 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TSC22D2O75157 780 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 ERN1O75460 977 aaKnown RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 SEC14L2O76054 403 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CKMP06732 381 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 BCKDHAP12694 445 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 GKP32189 559 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 NR4A2P43354 598 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 ABRQ12979 859 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TP53BP2Q13625 1128 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CYP27C1Q4G0S4 372 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 PLEKHG7Q6ZR37 379 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 MTERF3Q96E29 417 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 C1orf74Q96LT6 269 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 ALPK1Q96QP1 1244 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TNKS2Q9H2K2 1166 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 KLHL3Q9UH77 587 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 WBP11Q9Y2W2 641 aaKnown RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 PCDHB14Q9Y5E9 798 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 COL11A2P13942 1736 aaPredicted RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 MBLAC1A4D2B0 266 aaPredicted RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 MROH6A6NGR9 719 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 EPOP01588 193 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 TRBC1P01850 177 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 ZNF157P51786 506 aaPredicted RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 FAM110CQ1W6H9 321 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 PLEKHG6Q3KR16 790 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 RETSATQ6NUM9 610 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 KCNJ9Q92806 393 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 SPATA17Q96L03 361 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 SUSD3Q96L08 255 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 RDH12Q96NR8 316 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 INPP5KQ9BT40 448 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 AMBRA1Q9C0C7 1298 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CSNK1G1Q9HCP0 422 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 THUMPD1Q9NXG2 353 aaKnown RBP12.31□□□□□ -0.44
LIG1-221ENST00000613670 SCML2Q9UQR0 700 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 PCDHB1Q9Y5F3 818 aa12.31□□□□□ -0.44
LIG1-221ENST00000613670 CLDN11O75508 207 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 SERPIND1P05546 499 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 STARD3Q14849 445 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 CYHR1Q6ZMK1 362 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 WDR36Q8NI36 951 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 CD200R1Q8TD46 325 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 MYO19Q96H55 970 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 ZBED2Q9BTP6 218 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 BOCQ9BWV1 1114 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 GPN2Q9H9Y4 310 aaPredicted RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 POU2F3Q9UKI9 436 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 RAB23Q9ULC3 237 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 TMCC3Q9ULS5 477 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 ZNF232Q9UNY5 417 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 GLYATL1P3A0A0U1RQE8 302 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 MAGEB17A8MXT2 336 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 MANBAO00462 879 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 DNAJA1P31689 397 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 CHIT1Q13231 466 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 AQP6Q13520 282 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 MDGA1Q8NFP4 955 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 UBE2FQ969M7 185 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 HSH2DQ96JZ2 352 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 COPS8Q99627 209 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 C14orf119Q9NWQ9 140 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 INTS6Q9UL03 887 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 PCDHB8Q9UN66 801 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 PCDHB7Q9Y5E2 793 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 DLGAP1O14490 977 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 KPNA5O15131 536 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 HPRP00739 348 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 RPP38P78345 283 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 SMAD3P84022 425 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 CTU2Q2VPK5 515 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 TYW3Q6IPR3 259 aaKnown RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 FAM171BQ6P995 826 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 SLC34A3Q8N130 599 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 Q8N9G6 341 aaPredicted RBP12.3□□□□□ -0.44
LIG1-221ENST00000613670 UROC1Q96N76 676 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 NEURL2Q9BR09 285 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 DSN1Q9H410 356 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 PCDHGA4Q9Y5G9 962 aa12.3□□□□□ -0.44
LIG1-221ENST00000613670 LOC285095A0A1B0GVY8 99 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 AQP9O43315 295 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 MTX2O75431 263 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms