RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 GSTA2P09210 222 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 PVRP15151 417 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 MCM3P25205 808 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 PEBP1P30086 187 aaKnown RBP16.28■□□□□ 0.2
TRIM28-215ENST00000601150 SSTR1P30872 391 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 RGS4P49798 205 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 CDKN2DP55273 166 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 TUBB4BP68371 445 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 TIAL1Q01085 375 aaKnown RBP eCLIP16.28■□□□□ 0.2
TRIM28-215ENST00000601150 GUCY2DQ02846 1103 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 GPR19Q15760 415 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 MANEAQ5SRI9 462 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 LRRC8EQ6NSJ5 796 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 CAPN12Q6ZSI9 719 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 TRIM73Q86UV7 250 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 CACNA2D3Q8IZS8 1091 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 NLGN4XQ8N0W4 816 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 C2orf73Q8N5S3 287 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-215ENST00000601150 GPATCH11Q8N954 259 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 NOA1Q8NC60 698 aaKnown RBP16.28■□□□□ 0.2
TRIM28-215ENST00000601150 NLGN4YQ8NFZ3 816 aaPredicted RBP16.28■□□□□ 0.2
TRIM28-215ENST00000601150 OR9A1PQ8NGU1 263 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 OR8K5Q8NH50 307 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 SEC14L1Q92503 715 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 CRELD1Q96HD1 420 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 FCRL4Q96PJ5 515 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 FANCEQ9HB96 536 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 SYTL2Q9HCH5 934 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 NSMCE4AQ9NXX6 385 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 LNPEPQ9UIQ6 1025 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 PSAT1Q9Y617 370 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 ITPR1Q14643 2758 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 PTPRQQ9UMZ3 2332 aa16.28■□□□□ 0.2
TRIM28-215ENST00000601150 DLGAP3O95886 979 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 MSL3P1P0C860 447 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 MAGEA4P43358 317 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 MAP7Q14244 749 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.27■□□□□ 0.2
TRIM28-215ENST00000601150 HECTD2Q5U5R9 776 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 FAM45BPQ6NSW5 357 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 CYHR1Q6ZMK1 362 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 CCDC81Q6ZN84 652 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 TIPARPQ7Z3E1 657 aaKnown RBP16.27■□□□□ 0.2
TRIM28-215ENST00000601150 PIWIL4Q7Z3Z4 852 aaKnown RBP16.27■□□□□ 0.2
TRIM28-215ENST00000601150 STRA8Q7Z7C7 330 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 TAX1BP1Q86VP1 789 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 SPNS2Q8IVW8 549 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 IL22RA1Q8N6P7 574 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 CEP112Q8N8E3 955 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 C19orf47Q8N9M1 422 aaKnown RBP16.27■□□□□ 0.2
TRIM28-215ENST00000601150 HMGCLL1Q8TB92 370 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 FAM45AQ8TCE6 357 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 DENND1AQ8TEH3 1009 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 ASB11Q8WXH4 323 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 ZNF501Q96CX3 271 aaPredicted RBP16.27■□□□□ 0.2
TRIM28-215ENST00000601150 TCTN2Q96GX1 697 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 KLHL25Q9H0H3 589 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 PRORYQ9H606 182 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 CPNE5Q9HCH3 593 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 ZDHHC18Q9NUE0 388 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 VWA7Q9Y334 891 aa16.27■□□□□ 0.2
TRIM28-215ENST00000601150 KRT87PA6NCN2 255 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 GFYI3L273 518 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 MYO1CO00159 1063 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 KIAA0754O94854 1291 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 ZNF28P17035 718 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 MAP4P27816 1152 aaKnown RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CXADRP78310 365 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 VAC14Q08AM6 782 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 ILF2Q12905 390 aaKnown RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 PDAP1Q13442 181 aaKnown RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CYP2A13Q16696 494 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 GLE1Q53GS7 698 aaKnown RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 PWWP2BQ6NUJ5 590 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 PAQR3Q6TCH7 311 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 C3orf62Q6ZUJ4 267 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CYS1Q717R9 158 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 VASH2Q86V25 355 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 ZC3HC1Q86WB0 502 aaKnown RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 LMNTD1Q8N9Z9 388 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 FBXO15Q8NCQ5 510 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 EEF1AKMT1Q8WVE0 214 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CDKL2Q92772 493 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 FAM129AQ9BZQ8 928 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CHRNA10Q9GZZ6 450 aa16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.26■□□□□ 0.19
TRIM28-215ENST00000601150 CELSR3Q9NYQ7 3312 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 TCRBV9S1A1TA0A576 114 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 ZBTB14O43829 449 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 PRICKLE3O43900 615 aaPredicted RBP16.25■□□□□ 0.19
TRIM28-215ENST00000601150 FKBP9O95302 570 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 TIAF1O95411 115 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 ERGP11308 486 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 FDXRP22570 491 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 OAS2P29728 719 aaKnown RBP16.25■□□□□ 0.19
TRIM28-215ENST00000601150 HSD17B2P37059 387 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 GPX6P59796 221 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 IL2P60568 153 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 ARHGAP19Q14CB8 494 aa16.25■□□□□ 0.19
TRIM28-215ENST00000601150 SF1Q15637 639 aaKnown RBP16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms