RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 RALBP11234 206 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 FGF3P11487 239 aaPredicted RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 ATP1B2P14415 290 aaPredicted RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 CHRM3P20309 590 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CD1CP29017 333 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CRHR1P34998 444 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 NFKB2Q00653 900 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CTBSQ01459 385 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 SQSTM1Q13501 440 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CSHL1Q14406 222 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 TTC19Q6DKK2 380 aaPredicted RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 DOK6Q6PKX4 331 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 PAQR3Q6TCH7 311 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 TBC1D1Q86TI0 1168 aaPredicted RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 RASGEF1AQ8N9B8 481 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 AGBL5Q8NDL9 886 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 OR4D9Q8NGE8 314 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CD200R1Q8TD46 325 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 DENND1AQ8TEH3 1009 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 ANKRD49Q8WVL7 239 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 PATE1Q8WXA2 126 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 KCNJ9Q92806 393 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 NKD1Q969G9 470 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 NXNL1Q96CM4 212 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 TSNARE1Q96NA8 513 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 PAIP2Q9BPZ3 127 aaKnown RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 DDA1Q9BW61 102 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 ADNPQ9H2P0 1102 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 POPDC3Q9HBV1 291 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 INTS9Q9NV88 658 aaKnown RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 GEMIN8Q9NWZ8 242 aaKnown RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 TAS2R13Q9NYV9 303 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 TMEM216Q9P0N5 145 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 TRMT6Q9UJA5 497 aaKnown RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 TSR3Q9UJK0 312 aaKnown RBP12.36□□□□□ -0.43
UPF1-208ENST00000600012 BOD1L1Q8NFC6 3051 aa12.36□□□□□ -0.43
UPF1-208ENST00000600012 IGHV1OR21-1A0A087WYE8 117 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 H3BMM5 538 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 PPM1DO15297 605 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 TM9SF1O15321 606 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 SGTAO43765 313 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 PYGLP06737 847 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 GSTA1P08263 222 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 OR56A5P0C7T3 313 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CCDC166P0CW27 439 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 ZNF37AP17032 561 aaPredicted RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 CSTF2P33240 577 aaKnown RBP eCLIP12.35□□□□□ -0.43
UPF1-208ENST00000600012 ACTR1BP42025 376 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 GLRBP48167 497 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CCT5P48643 541 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CLCN7P51798 805 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CTSCP53634 463 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 WDR4P57081 412 aaKnown RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 ACTR1AP61163 376 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CYP4F2P78329 520 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 GUCY1A3Q02108 690 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 TMEM115Q12893 351 aaPredicted RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 SEPT7Q16181 437 aaKnown RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 NAPRTQ6XQN6 538 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 ADGRG6Q86SQ4 1221 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 CPNE9Q8IYJ1 553 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 IL22RA1Q8N6P7 574 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 BEND7Q8N7W2 519 aaPredicted RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 ARMC2Q8NEN0 867 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 JPH3Q8WXH2 748 aaPredicted RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 SCARF2Q96GP6 870 aaPredicted RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 COX14Q96I36 57 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 OR2M4Q96R27 311 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 SLC12A9Q9BXP2 914 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 SLC25A18Q9H1K4 315 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 OR2AG1Q9H205 316 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 IGSF5Q9NSI5 407 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 DCDC2Q9UHG0 476 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 RUVBL2Q9Y230 463 aaKnown RBP12.35□□□□□ -0.43
UPF1-208ENST00000600012 PLLPQ9Y342 182 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 ST14Q9Y5Y6 855 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 DOPEY2Q9Y3R5 2298 aa12.35□□□□□ -0.43
UPF1-208ENST00000600012 PLIN3O60664 434 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 KLHL2O95198 593 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 ASMTLO95671 621 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 PROCP04070 461 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 LTA4HP09960 611 aaKnown RBP12.34□□□□□ -0.43
UPF1-208ENST00000600012 THRAP10827 490 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 CD9P21926 228 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 CSF2RBP32927 897 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 MDH1P40925 334 aaKnown RBP12.34□□□□□ -0.43
UPF1-208ENST00000600012 ETV4P43268 484 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 SLC18A1P54219 525 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 RAB15P59190 212 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 GPLD1P80108 840 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 CBX1P83916 185 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 CLCA4Q14CN2 919 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 INSCQ1MX18 579 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 HHATQ5VTY9 493 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 NKAIN2Q5VXU1 208 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 LRRC8EQ6NSJ5 796 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 BORAQ6PGQ7 559 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 TAX1BP1Q86VP1 789 aa12.34□□□□□ -0.43
UPF1-208ENST00000600012 CCDC63Q8NA47 563 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms