RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 KCNJ9Q92806 393 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 INPP5DQ92835 1189 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 FAM136AQ96C01 138 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 LRRC39Q96DD0 335 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 SNF8Q96H20 258 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 PPM1MQ96MI6 270 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 BIRC8Q96P09 236 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 OR2A14Q96R47 310 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 FBXO6Q9NRD1 293 aaPredicted RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 IARS2Q9NSE4 1012 aaKnown RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 TXLNGQ9NUQ3 528 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 UTP6Q9NYH9 597 aaKnown RBP13.66□□□□□ -0.22
LIG1-218ENST00000599322 FBXO5Q9UKT4 447 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 PLCL2Q9UPR0 1127 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 CDYLQ9Y232 598 aa13.66□□□□□ -0.22
LIG1-218ENST00000599322 ZCWPW2A0A1B0GU75 182 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 EFCAB8A8MWE9 144 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 C9J4A7 227 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 NKX2-8O15522 239 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 ZBTB14O43829 449 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 OR2B3O76000 313 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 C1orf105O95561 183 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 RECKO95980 971 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 PVRP15151 417 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 OAS2P29728 719 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 SKIV2L2P42285 1042 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 PTGIRP43119 386 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 RGS4P49798 205 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 DHX9Q08211 1270 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 CDC20Q12834 499 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 CALCOCO2Q13137 446 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 CRYMQ14894 314 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 HIF1AQ16665 826 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 TLDC1Q6P9B6 456 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 NEK10Q6ZWH5 1172 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 TRIM73Q86UV7 250 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 APOBEC4Q8WW27 367 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 RNF31Q96EP0 1072 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 LRFN5Q96NI6 719 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 KRT12Q99456 494 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 DPH2Q9BQC3 489 aaPredicted RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 TWSG1Q9GZX9 223 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 CHRNA10Q9GZZ6 450 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 ADNPQ9H2P0 1102 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 SPHK1Q9NYA1 384 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 SPATA7Q9P0W8 599 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 ZC3H7BQ9UGR2 993 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 IL17BQ9UHF5 180 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 GPN3Q9UHW5 284 aaPredicted RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 TRMT6Q9UJA5 497 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 TSR3Q9UJK0 312 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 FARSAQ9Y285 508 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 HEMK1Q9Y5R4 338 aaPredicted RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 FLNBO75369 2602 aaKnown RBP13.65□□□□□ -0.22
LIG1-218ENST00000599322 PIEZO2Q9H5I5 2752 aa13.65□□□□□ -0.22
LIG1-218ENST00000599322 MEN1O00255 615 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 TTI1O43156 1089 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CREG1O75629 220 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 TIAF1O95411 115 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CBSLP0DN79 551 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CBSP35520 551 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 SLC1A2P43004 574 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 ERV3-1Q14264 604 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 KLHL38Q2WGJ6 581 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 DEFB109BQ30KR1 87 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CDHR3Q6ZTQ4 885 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 KIAA0408Q6ZU52 694 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 DENND6AQ8IWF6 608 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 C2orf73Q8N5S3 287 aaPredicted RBP13.64□□□□□ -0.23
LIG1-218ENST00000599322 OR1L3Q8NH93 324 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CT55Q8WUE5 264 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 DLG3Q92796 817 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 ZUFSPQ96AP4 578 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 CFAP36Q96G28 342 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 NDC1Q9BTX1 674 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 TRIM31Q9BZY9 425 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 TAS2R13Q9NYV9 303 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 IL1RAPL1Q9NZN1 696 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 SRPK3Q9UPE1 567 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 POLHQ9Y253 713 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 PADI2Q9Y2J8 665 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 PCDHGA6Q9Y5G7 932 aa13.64□□□□□ -0.23
LIG1-218ENST00000599322 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.64□□□□□ -0.23
LIG1-218ENST00000599322 CDC14CA4D256 554 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 FAM187AA6NFU0 413 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 J3QKU1 62 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 EIF3FO00303 357 aaPredicted RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 ZNF749O43361 778 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 CCNDBP1O95273 360 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 SYF2O95926 243 aaKnown RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 MPC1LP0DKB6 136 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 PIM1P11309 404 aaPredicted RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 WT1P19544 449 aaPredicted RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 PTPN4P29074 926 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 CMPK1P30085 196 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 RPA3P35244 121 aaPredicted RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 BDKRB1P46663 353 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 CARSP49589 748 aaKnown RBP13.63□□□□□ -0.23
LIG1-218ENST00000599322 ITGA8P53708 1063 aa13.63□□□□□ -0.23
LIG1-218ENST00000599322 ARSFP54793 590 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms