RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 EID3Q8N140 333 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 ADAD2Q8NCV1 583 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 HPSE2Q8WWQ2 592 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 PGAP3Q96FM1 320 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 THOC1Q96FV9 657 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 LINC00615Q96LM1 132 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 RAD9AQ99638 391 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 ZNF71Q9NQZ8 489 aaPredicted RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 DISP3Q9P2K9 1392 aa4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 MRPS28Q9Y2Q9 187 aaKnown RBP4.08□□□□□ -1.76
SMCHD1-204ENST00000581226 A0A1W2PPQ1 181 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 NEMP2A6NFY4 417 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 TRIM77I1YAP6 450 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 NR5A2O00482 541 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 IGLV1-44P01699 117 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 FAM157CP0CG43 387 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 MYBL1P10243 752 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 SP3Q02447 781 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 ITGA9Q13797 1035 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 RASA2Q15283 850 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 CA9Q16790 459 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 VWC2Q2TAL6 325 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 SPDYCQ5MJ68 293 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 ARMC4Q5T2S8 1044 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 C20orf194Q5TEA3 1177 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 PRR27Q6MZM9 219 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 SLC30A6Q6NXT4 461 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 ZBTB49Q6ZSB9 765 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 KRT74Q7RTS7 529 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 NUP54Q7Z3B4 507 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 CENPVQ7Z7K6 275 aaPredicted RBP4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 ZBTB8BQ8NAP8 495 aaPredicted RBP4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 SLC4A11Q8NBS3 891 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 OR4C3Q8NH37 302 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 HCAR2Q8TDS4 363 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 SUSD6Q92537 303 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 ARSGQ96EG1 525 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 TXLNGYQ9BZA5 131 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 WDR35Q9P2L0 1181 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 CPSF3Q9UKF6 684 aaKnown RBP4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 RNF150Q9ULK6 438 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 TRIM17Q9Y577 477 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 RPS6KL1Q9Y6S9 549 aa4.07□□□□□ -1.76
SMCHD1-204ENST00000581226 IGHV4-4A0A075B6R2 117 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 KLF11O14901 512 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 CDC123O75794 336 aaPredicted RBP4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 AP2A2O94973 939 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 DNTTP04053 509 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 IGHV4-31P0DP07 118 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 HAPLN1P10915 354 aaPredicted RBP4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 ZNF26P17031 533 aaPredicted RBP4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 CDH3P22223 829 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 CPT2P23786 658 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 MAGEA11P43364 429 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 NKX2-1P43699 371 aaPredicted RBP4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 RPL21P46778 160 aaKnown RBP4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 UGP2Q16851 508 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 UGT3A2Q3SY77 523 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 KRT39Q6A163 491 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 KRTAP5-1Q6L8H4 278 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 DET1Q7L5Y6 550 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 OR8H2Q8N162 312 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 THAP8Q8NA92 274 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 TMEM178AQ8NBL3 297 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 OR52N5Q8NH56 324 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 PRAC1Q96KF2 57 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 P4HTMQ9NXG6 502 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 TMED3Q9Y3Q3 217 aa4.06□□□□□ -1.76
SMCHD1-204ENST00000581226 ENO4A6NNW6 628 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 DIAPH2O60879 1101 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 DFFBO76075 338 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 CELF2O95319 508 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 C22orf31O95567 290 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 RAF1P04049 648 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 CCR10P46092 362 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 RAB28P51157 221 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 MAZP56270 477 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 ERVK11-1P61568 191 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 SNRPD1P62314 119 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 TAF10Q12962 218 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 TUBB2AQ13885 445 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 SQLEQ14534 574 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 KCTD2Q14681 263 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 TEAD2Q15562 447 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 KYNUQ16719 465 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 MCMDC2Q4G0Z9 681 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 XKR3Q5GH77 459 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 KRT80Q6KB66 452 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 ZNF611Q8N823 705 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 TDRD5Q8NAT2 981 aaKnown RBP4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 OR2T11Q8NH01 316 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 MRGPRDQ8TDS7 321 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 MOB3AQ96BX8 217 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 HDAC11Q96DB2 347 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 GMPPAQ96IJ6 420 aaPredicted RBP4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 ASCL2Q99929 193 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 TUBB2BQ9BVA1 445 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 WDR13Q9H1Z4 485 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 FGF22Q9HCT0 170 aa4.05□□□□□ -1.76
SMCHD1-204ENST00000581226 CLIC5Q9NZA1 410 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms