RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 AMIGO1Q86WK6 493 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 GIMAP7Q8NHV1 300 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 MRRFQ96E11 262 aaKnown RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 ZDHHC12Q96GR4 267 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CCDC74BQ96LY2 380 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 CYTH2Q99418 400 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 SLC30A3Q99726 388 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 TFB2MQ9H5Q4 396 aaKnown RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 XKR8Q9H6D3 395 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 OGFRQ9NZT2 677 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 TMEM9Q9P0T7 183 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 SLC39A10Q9ULF5 831 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 RUVBL2Q9Y230 463 aaKnown RBP16.73■□□□□ 0.27
CLN3-217ENST00000565354 NFS1Q9Y697 457 aa16.73■□□□□ 0.27
CLN3-217ENST00000565354 NBPF19A0A087WUL8 3843 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 IGHV5-10-1A0A0J9YXX1 117 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 GSAPA4D1B5 854 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 PABPN1LA6NDY0 278 aaKnown RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 OR5K3A6NET4 321 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 A8MU76 341 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 NVLO15381 856 aaKnown RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 RASSF9O75901 435 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 CATP04040 527 aaKnown RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 HGFP14210 728 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 POLR2CP19387 275 aaPredicted RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 FDXRP22570 491 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 MAP4P27816 1152 aaKnown RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 SPRP35270 261 aaPredicted RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 GFERP55789 205 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 TRA2AQ13595 282 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-217ENST00000565354 GBX1Q14549 363 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 TBR1Q16650 682 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 GRTP1Q5TC63 336 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 NEK10Q6ZWH5 1172 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 TMPRSS9Q7Z410 1059 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 SLITRK4Q8IW52 837 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 GSPT2Q8IYD1 628 aaKnown RBP16.72■□□□□ 0.27
CLN3-217ENST00000565354 MYO1HQ8N1T3 1032 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 UBXN4Q92575 508 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 RAD51AP1Q96B01 352 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 RBBP8Q99708 897 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 CMKLR1Q99788 373 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 ANKMY1Q9P2S6 941 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 PLAGL1Q9UM63 463 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 MED16Q9Y2X0 877 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 PCDHGA4Q9Y5G9 962 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 IKBKGQ9Y6K9 419 aa16.72■□□□□ 0.27
CLN3-217ENST00000565354 EIF3FO00303 357 aaPredicted RBP16.71■□□□□ 0.27
CLN3-217ENST00000565354 MATN2O00339 956 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 C1orf105O95561 183 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 JMJD7P0C870 316 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 THRAP10827 490 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 CD9P21926 228 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 CSTF2P33240 577 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLN3-217ENST00000565354 PMS2P54278 862 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 IL2P60568 153 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 ZFP36L1Q07352 338 aaKnown RBP16.71■□□□□ 0.27
CLN3-217ENST00000565354 EFTUD2Q15029 972 aaKnown RBP eCLIP16.71■□□□□ 0.276e-10■■■■□ 26.2
CLN3-217ENST00000565354 MANEAQ5SRI9 462 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 PAQR3Q6TCH7 311 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 FAM92BQ6ZTR7 304 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 EIF1ADQ8N9N8 165 aaKnown RBP16.71■□□□□ 0.27
CLN3-217ENST00000565354 ZSCAN1Q8NBB4 408 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 RCBTB1Q8NDN9 531 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 LINGO1Q96FE5 620 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 TSPAN17Q96FV3 270 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 OLFM1Q99784 485 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 RAB11FIP5Q9BXF6 653 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 PISDQ9UG56 409 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 CIDEBQ9UHD4 219 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 LOXL2Q9Y4K0 774 aa16.71■□□□□ 0.27
CLN3-217ENST00000565354 MN1Q10571 1320 aaPredicted RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 A0A087WUV0 522 aaPredicted RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 HGSO14964 777 aaPredicted RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 MATN4O95460 622 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 POU4F1Q01851 419 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 TLE1Q04724 770 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 USP10Q14694 798 aaKnown RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 CACHD1Q5VU97 1274 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 TRMT10CQ7L0Y3 403 aaKnown RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 PIWIL4Q7Z3Z4 852 aaKnown RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 VASH2Q86V25 355 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 UHMK1Q8TAS1 419 aaKnown RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 EEF1AKMT1Q8WVE0 214 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 RAB33BQ9H082 229 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 ACSS3Q9H6R3 686 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 SYTL2Q9HCH5 934 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 EPHA6Q9UF33 1036 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.7■□□□□ 0.26
CLN3-217ENST00000565354 LNPEPQ9UIQ6 1025 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 ICKQ9UPZ9 632 aa16.7■□□□□ 0.26
CLN3-217ENST00000565354 MTO1Q9Y2Z2 717 aaKnown RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 V9GYY5 206 aaPredicted RBP16.7■□□□□ 0.26
CLN3-217ENST00000565354 NOTCH2Q04721 2471 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 PIPSLA2A3N6 862 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 C2orf74A8MZ97 194 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 BTN3A1O00481 513 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 ZBTB14O43829 449 aa16.69■□□□□ 0.26
CLN3-217ENST00000565354 SYF2O95926 243 aaKnown RBP16.69■□□□□ 0.26
CLN3-217ENST00000565354 C9P02748 559 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms