RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	FOXK1	P85037	733 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	IL10RA	Q13651	578 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	GRM7	Q14831	915 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	KIAA0930	Q6ICG6	404 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	FAM198B	Q6UWH4	519 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	TTC29	Q8NA56	475 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	SLC38A9	Q8NBW4	561 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	CLEC1A	Q8NC01	280 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	CFAP61	Q8NHU2	1237 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	TM9SF4	Q92544	642 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	ZUFSP	Q96AP4	578 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	FKBP10	Q96AY3	582 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	RNF31	Q96EP0	1072 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	ZNF778	Q96MU6	729 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	KLHL25	Q9H0H3	589 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	CCDC68	Q9H2F9	335 aa		13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	INTS10	Q9NVR2	710 aa	Known RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	NXT1	Q9UKK6	140 aa	Known RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	SETX	Q7Z333	2677 aa	Known RBP	13.57	□□□□□ -0.24
TPM1-223	ENST00000560445	ZSCAN12	O43309	604 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	IPO13	O94829	963 aa	Known RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	ZIC2	O95409	532 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	MGAT1	P26572	445 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	PTGIR	P43119	386 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	MAGEA6	P43360	314 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	CCL11	P51671	97 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	GPS1	Q13098	491 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	THOC5	Q13769	683 aa	Known RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	SSPN	Q14714	243 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	SF1	Q15637	639 aa	Known RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	TYSND1	Q2T9J0	566 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	FAM214A	Q32MH5	1076 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	PTCHD3	Q3KNS1	767 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	PAPD7	Q5XG87	772 aa	Known RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	TRIM73	Q86UV7	250 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	HMGCLL1	Q8TB92	370 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	CALML6	Q8TD86	181 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	ADAMTS17	Q8TE56	1095 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	ANP32B	Q92688	251 aa	Known RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	P2RY12	Q9H244	342 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	SPHK1	Q9NYA1	384 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	EURL	Q9NYK6	297 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	GPR83	Q9NYM4	423 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	TTC7A	Q9ULT0	858 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM1-223	ENST00000560445	CDYL	Q9Y232	598 aa		13.56	□□□□□ -0.24
TPM1-223	ENST00000560445		A0A1B0GX78	115 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	PGRMC1	O00264	195 aa	Known RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	SRPX2	O60687	465 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	CEACAM4	O75871	244 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	CCNDBP1	O95273	360 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	KRT14	P02533	472 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	MAG	P20916	626 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	NMBR	P28336	390 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	CCZ1B	P86790	482 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	CCZ1	P86791	482 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	SEMA3A	Q14563	771 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	NKAIN1	Q4KMZ8	207 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	IRAK1BP1	Q5VVH5	260 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	MLIP	Q5VWP3	458 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	LRRC8E	Q6NSJ5	796 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	NAPRT	Q6XQN6	538 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	TMEM135	Q86UB9	458 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	DNAJC22	Q8N4W6	341 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	ZNF655	Q8N720	491 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	GLIS1	Q8NBF1	620 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	MCU	Q8NE86	351 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	OR2Y1	Q8NGV0	311 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	MAGOHB	Q96A72	148 aa	Known RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	PTER	Q96BW5	349 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	GBP5	Q96PP8	586 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	WDR54	Q9H977	334 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	AKIRIN1	Q9H9L7	192 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	FAM60A	Q9NP50	221 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	SYBU	Q9NX95	663 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	C5AR2	Q9P296	337 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	MARCH4	Q9P2E8	410 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	KLHL42	Q9P2K6	505 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	PLAGL1	Q9UM63	463 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	PTRH2	Q9Y3E5	179 aa	Known RBP	13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	COMMD10	Q9Y6G5	202 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	SPTB	P11277	2137 aa		13.55	□□□□□ -0.24
TPM1-223	ENST00000560445	RP1L1	Q8IWN7	2480 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	FAM237B	A0A1B0GVD1	139 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	SDR42E2	A6NKP2	422 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	TTLL8	A6PVC2	850 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	IQCF5	A8MTL0	148 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	VPS4B	O75351	444 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	VPS26A	O75436	327 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ALB	P02768	609 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CAT	P04040	527 aa	Known RBP	13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CHRM3	P20309	590 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CMPK1	P30085	196 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	OTX2	P32243	289 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CXCR5	P32302	372 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	KCNJ1	P48048	391 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CRADD	P78560	199 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ARHGAP19	Q14CB8	494 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	CYP2A13	Q16696	494 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	DEFB110	Q30KQ9	67 aa		13.54	□□□□□ -0.24
TPM1-223	ENST00000560445	ANKRD20A4	Q4UJ75	823 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 25 ms