RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR52B6Q8NGF0 335 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 MARK4Q96L34 752 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 CCDC138Q96M89 665 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 KCNA7Q96RP8 456 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 P2RY13Q9BPV8 354 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 PLA2G2FQ9BZM2 168 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 TRIM39Q9HCM9 518 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 TRPV5Q9NQA5 729 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 TBC1D23Q9NUY8 699 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 AIG1Q9NVV5 245 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 CCDC167Q9P0B6 97 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 ZNF225Q9UK10 706 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 BTRCQ9Y297 605 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 TMED5Q9Y3A6 229 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 COL4A3Q01955 1670 aa12.34□□□□□ -0.43
SHMT2-229ENST00000557348 SLC5A10A0PJK1 596 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 CCDC160A6NGH7 325 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 OR2AG2A6NM03 316 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 RFXAPO00287 272 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ARNTLO00327 626 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 MRASO14807 208 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ANGPT2O15123 496 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 SGTAO43765 313 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 CLDN9O95484 217 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 NPPAP01160 153 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ALDOCP09972 364 aaKnown RBP12.33□□□□□ -0.44
SHMT2-229ENST00000557348 SLC6A12P48065 614 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 EMX2Q04743 252 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 FOXM1Q08050 763 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 CST6Q15828 149 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 KCTD21Q4G0X4 260 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 EGFLAMQ63HQ2 1017 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF776Q68DI1 518 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-229ENST00000557348 REP15Q6BDI9 236 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 IL27RAQ6UWB1 636 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 GK5Q6ZS86 529 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 KLHDC8AQ8IYD2 350 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 PACRGLQ8N7B6 248 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 RASGEF1AQ8N9B8 481 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 FGF14Q92915 247 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 BORCS5Q969J3 196 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 HOPXQ9BPY8 73 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ACTR8Q9H981 624 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 SPAG4Q9NPE6 437 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 HEBP1Q9NRV9 189 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 PNPLA3Q9NST1 481 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 DNAJC11Q9NVH1 559 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 GID8Q9NWU2 228 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 GIN1Q9NXP7 522 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 CACNA2D2Q9NY47 1150 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 RIMS3Q9UJD0 308 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 TSR3Q9UJK0 312 aaKnown RBP12.33□□□□□ -0.44
SHMT2-229ENST00000557348 SCML1Q9UN30 329 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 SNX6Q9UNH7 406 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 ITM2BQ9Y287 266 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 TIMM22Q9Y584 194 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 DNMT3AQ9Y6K1 912 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-229ENST00000557348 PLXNB3Q9ULL4 1909 aa12.33□□□□□ -0.44
SHMT2-229ENST00000557348 PRSS51A0A1B0GVH4 220 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ULK1O75385 1050 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PDE5AO76074 875 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PGM3O95394 542 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 H6PDO95479 791 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 STAMBPO95630 424 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PRDX3P30048 256 aaKnown RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PNLIPRP1P54315 467 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 KCNK10P57789 538 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 RPA4Q13156 261 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 CCDC92Q53HC0 331 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 C10orf62Q5T681 223 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PIP5KL1Q5T9C9 394 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TMEM220Q6QAJ8 160 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PRR23BQ6ZRT6 265 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 METTL25Q8N6Q8 603 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TSPAN14Q8NG11 270 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 C1QTNF7Q9BXJ2 289 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 YTHDF1Q9BYJ9 559 aaKnown RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 DPEP2Q9H4A9 486 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ASIC5Q9NY37 505 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TMEM9Q9P0T7 183 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 GPR45Q9Y5Y3 372 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TMEM265A0A087WTH1 108 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 SERTM1A2A2V5 107 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 H3BM21 787 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 TRIM38O00635 465 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 MMP20O60882 483 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 MTX2O75431 263 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 BCAS2O75934 225 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 OR6B1O95007 311 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ACPPP15309 386 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ME2P23368 584 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 SLC5A2P31639 672 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 MYBPC1Q00872 1141 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PCDH1Q08174 1060 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 CNTN1Q12860 1018 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 HTR4Q13639 388 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 NR6A1Q15406 480 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 ZNF829Q3KNS6 432 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-229ENST00000557348 FBXO48Q5FWF7 155 aa12.32□□□□□ -0.44
SHMT2-229ENST00000557348 PIGGQ5H8A4 983 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms