RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 OR5K1Q8NHB7 308 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 DACT3Q96B18 629 aaPredicted RBP15.32■□□□□ 0.04
SYNE3-203ENST00000554873 SENP8Q96LD8 212 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 RHNO1Q9BSD3 238 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 PCDH10Q9P2E7 1040 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 GIMAP2Q9UG22 337 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 CDH9Q9ULB4 789 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 INVSQ9Y283 1065 aa15.32■□□□□ 0.04
SYNE3-203ENST00000554873 FNDC1Q4ZHG4 1894 aaPredicted RBP15.32■□□□□ 0.04
SYNE3-203ENST00000554873 MYLKQ15746 1914 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 CCDC182A6NF36 153 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 MAFKO60675 156 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 CDK14O94921 469 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 ADORA3P0DMS8 318 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 CA5AP35218 305 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 SNRPD2P62316 118 aaKnown RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 PCBP1Q15365 356 aaKnown RBP eCLIP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 AGAP9Q5VTM2 703 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 PHYKPLQ8IUZ5 450 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 SLC22A9Q8IVM8 553 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 ATPAF2Q8N5M1 289 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 ANKRD49Q8WVL7 239 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 IPCEF1Q8WWN9 437 aaPredicted RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 ACOX2Q99424 681 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 HDHD5Q9BXW7 423 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 TMEFF2Q9UIK5 374 aaPredicted RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 LEF1Q9UJU2 399 aaPredicted RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 NEU3Q9UQ49 428 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 LTA4HP09960 611 aaKnown RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 SMIM10L2AP0DMW4 78 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 SMIM10L2BP0DMW5 78 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 LBPP18428 481 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 SOX6P35712 828 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 KCNC1P48547 511 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 RCAN2Q14206 197 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 IRF3Q14653 427 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 DUSP28Q4G0W2 176 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 NOMO2Q5JPE7 1267 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 KIAA0930Q6ICG6 404 aaPredicted RBP15.31■□□□□ 0.04
SYNE3-203ENST00000554873 RANBP10Q6VN20 620 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 ITCHQ96J02 903 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 AASSQ9UDR5 926 aa15.31■□□□□ 0.04
SYNE3-203ENST00000554873 CCNYL3P0C7X3 344 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 PAMP19021 973 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 PRKACGP22612 351 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 MYL9P24844 172 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 HLA-DMAP28067 261 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 GEMP55040 296 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 LAPTM5Q13571 262 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ARSKQ6UWY0 536 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 CCDC117Q8IWD4 279 aaPredicted RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 MRGPRX2Q96LB1 330 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SLC39A8Q9C0K1 460 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SPON1Q9HCB6 807 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 TLR6Q9Y2C9 796 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 DNAJC15Q9Y5T4 150 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ARPC4-TTLL3A0A0A6YYG9 625 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SMIM35A0A1B0GVV1 85 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 MATN3O15232 486 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 IFNA16P05015 189 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 HLA-DQB2P05538 268 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 DCTP40126 519 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 GALEQ14376 348 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ZNF267Q14586 743 aaPredicted RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 GARNL3Q5VVW2 1013 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 UBASH3BQ8TF42 649 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ZNF578Q96N58 590 aaPredicted RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 GTPBP2Q9BX10 602 aaKnown RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 FSD1LQ9BXM9 530 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SLC22A4Q9H015 551 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 FAM83DQ9H4H8 585 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 INTS7Q9NVH2 962 aaKnown RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 RBM22Q9NW64 420 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 A8MUA0 341 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 M0R082 166 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 C1RP00736 705 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ZNF250P15622 560 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 CASP2P42575 452 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 HUNKP57058 714 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 KEAP1Q14145 624 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 GBX1Q14549 363 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 CAPN13Q6MZZ7 669 aaPredicted RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 ADHFE1Q8IWW8 467 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 RDH10Q8IZV5 341 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 LINC00518Q8N0U6 118 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 VWA5B2Q8N398 1253 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 DNAJA4Q8WW22 397 aaPredicted RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 MSANTD3Q96H12 275 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 FRMD6Q96NE9 622 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SIGLEC11Q96RL6 698 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 CARS2Q9HA77 564 aaKnown RBP15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SLAMF8Q9P0V8 285 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 SLC23A1Q9UHI7 598 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 HSPB11Q9Y547 144 aa15.3■□□□□ 0.04
SYNE3-203ENST00000554873 LOC100506127A0A0U1RQW1 187 aa15.29■□□□□ 0.04
SYNE3-203ENST00000554873 B3GALNT1O75752 331 aa15.29■□□□□ 0.04
SYNE3-203ENST00000554873 HGFP14210 728 aa15.29■□□□□ 0.04
SYNE3-203ENST00000554873 GGT1P19440 569 aa15.29■□□□□ 0.04
SYNE3-203ENST00000554873 DDCP20711 480 aa15.29■□□□□ 0.04
SYNE3-203ENST00000554873 EFNA1P20827 205 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms