RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 HBQ1P09105 142 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 RNF224P0DH78 156 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 PEBP1P30086 187 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 OTX2P32243 289 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 SHMT2P34897 504 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 GRIA1P42261 906 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 CSE1LP55060 971 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 SSPNQ14714 243 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 P3H1Q32P28 736 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 C11orf91Q3C1V1 193 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 FHL5Q5TD97 284 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 SLC6A19Q695T7 634 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 PACS1Q6VY07 963 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 KIAA1328Q86T90 577 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 PRUNE1Q86TP1 453 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 HOOK3Q86VS8 718 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 GPR135Q8IZ08 494 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 ALDH16A1Q8IZ83 802 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 DNAJC22Q8N4W6 341 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 OR13J1Q8NGT2 312 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 ATG4AQ8WYN0 398 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 N4BP2L2Q92802 583 aaPredicted RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 PCSK5Q92824 1860 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 HDAC10Q969S8 669 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.16□□□□□ -1.1
USP28-215ENST00000545608 MRFAP1L1Q96HT8 127 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 ZNF778Q96MU6 729 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 GBP5Q96PP8 586 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 ALS2CR12Q96Q35 445 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 SMAD5Q99717 465 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 DPH2Q9BQC3 489 aaPredicted RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 DHRS4Q9BTZ2 278 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 RBSNQ9H1K0 784 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 RRAGDQ9NQL2 400 aaPredicted RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 GPR83Q9NYM4 423 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 IMPACTQ9P2X3 320 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 DHCR7Q9UBM7 475 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 POLG2Q9UHN1 485 aa8.16□□□□□ -1.1
USP28-215ENST00000545608 PTRH2Q9Y3E5 179 aaKnown RBP8.16□□□□□ -1.1
USP28-215ENST00000545608 FLNCQ14315 2725 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 IQCF5A8MTL0 148 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 MIF4GDA9UHW6 222 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 ISM1B1AKI9 464 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 TCP11X1B4DZS4 312 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 QSOX1O00391 747 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 KRT86O43790 486 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 AGFG2O95081 481 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 OR56A5P0C7T3 313 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 ETS1P14921 441 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 VAMP1P23763 118 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 CCR7P32248 378 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 RRADP55042 308 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 DCDP81605 110 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 CDH17Q12864 832 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 MRPL49Q13405 166 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 SEMA3AQ14563 771 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 SLC9A5Q14940 896 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 KYNUQ16719 465 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 EIF2S3LQ2VIR3 472 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 PLEKHN1Q494U1 663 aaPredicted RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 C4orf17Q53FE4 359 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 TSTD2Q5T7W7 516 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 RHBDD2Q6NTF9 364 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 MRPL14Q6P1L8 145 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 ZNF534Q76KX8 674 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 MRGPREQ86SM8 312 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 LINC00523Q86TU6 105 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 RAB43Q86YS6 212 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 HPS6Q86YV9 775 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 TMEM139Q8IV31 216 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 VRK3Q8IV63 474 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 C2orf73Q8N5S3 287 aaPredicted RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 ZNF655Q8N720 491 aaPredicted RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 UBL4BQ8N7F7 174 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 DNAAF3Q8N9W5 541 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 OR5K2Q8NHB8 316 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 LKAAEAR1Q8TD35 194 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 C19orf60Q96EN9 201 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 SGSM3Q96HU1 749 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 IL17FQ96PD4 163 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 DESI2Q9BSY9 194 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 AP1M1Q9BXS5 423 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 CHRNA10Q9GZZ6 450 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 ZFAND3Q9H8U3 227 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 SLAMF7Q9NQ25 335 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 SLC22A11Q9NSA0 550 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 OR6C2Q9NZP2 312 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 IFT80Q9P2H3 777 aaPredicted RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 CIDEBQ9UHD4 219 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 GPN3Q9UHW5 284 aaPredicted RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 G3BP2Q9UN86 482 aaKnown RBP8.15□□□□□ -1.1
USP28-215ENST00000545608 CDYLQ9Y232 598 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 PADI2Q9Y2J8 665 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 KLHL20Q9Y2M5 609 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 AP1M2Q9Y6Q5 423 aa8.15□□□□□ -1.1
USP28-215ENST00000545608 USP9YO00507 2555 aaPredicted RBP8.14□□□□□ -1.11
USP28-215ENST00000545608 USP9XQ93008 2570 aaPredicted RBP8.14□□□□□ -1.11
USP28-215ENST00000545608 HEATR9A2RTY3 570 aa8.14□□□□□ -1.11
USP28-215ENST00000545608 ZSCAN9O15535 394 aaPredicted RBP8.14□□□□□ -1.11
USP28-215ENST00000545608 LIASO43766 372 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms