RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ANKFN1Q8N957 763 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 TRPV3Q8NET8 790 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 MED8Q96G25 268 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 OR52E6Q96RD3 313 aa15.9■□□□□ 0.14
COL4A1-204ENST00000543140 THUMPD3Q9BV44 507 aaKnown RBP15.9■□□□□ 0.14
COL4A1-204ENST00000543140 K7ESM1 405 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 IFRD1O00458 451 aaPredicted RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 WNT9AO14904 365 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 AP2A2O94973 939 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 LRATO95237 230 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 ASLP04424 464 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 NELFEP18615 380 aaKnown RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 TACR1P25103 407 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 HTR1EP28566 365 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 AP1S2P56377 157 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 AASDHQ4L235 1098 aaPredicted RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 TMEM220Q6QAJ8 160 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 DTWD1Q8N5C7 304 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 GFM2Q969S9 779 aaKnown RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 TIFAQ96CG3 184 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 LRIG1Q96JA1 1093 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 IKZF5Q9H5V7 419 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 CLMPQ9H6B4 373 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 ANAPC2Q9UJX6 822 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 C2orf16Q68DN1 1984 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 AREL1O15033 823 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 SLC16A5O15375 505 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 HOXC11O43248 304 aaPredicted RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 ATG13O75143 517 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 B3GALT4O96024 378 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 PDHA2P29803 388 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 BDKRB1P46663 353 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 PLOD1Q02809 727 aaPredicted RBP15.89■□□□□ 0.13
COL4A1-204ENST00000543140 GTDC1Q4AE62 458 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 LDLRAP1Q5SW96 308 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 RNF165Q6ZSG1 346 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 EPHX4Q8IUS5 362 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 APIPQ96GX9 242 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 MUC13Q9H3R2 512 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 SLC6A13Q9NSD5 602 aa15.89■□□□□ 0.13
COL4A1-204ENST00000543140 NUP210Q8TEM1 1887 aaPredicted RBP15.88■□□□□ 0.13
COL4A1-204ENST00000543140 GRXCR2A6NFK2 248 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 SPINT1O43278 529 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 GPIP06744 558 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 RPS14P62263 151 aaKnown RBP15.88■□□□□ 0.13
COL4A1-204ENST00000543140 PHC1P78364 1004 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 GPM6BQ13491 265 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 TTC23LQ6PF05 361 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 CYP2U1Q7Z449 544 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 ANKRD46Q86W74 232 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 APLFQ8IW19 511 aaPredicted RBP15.88■□□□□ 0.13
COL4A1-204ENST00000543140 ETFBKMTQ8IXQ9 262 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 L3MBTL4Q8NA19 623 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 VN1R2Q8NFZ6 395 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 OR10A6Q8NH74 314 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 BPIFB1Q8TDL5 484 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 EGLN2Q96KS0 407 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 RNF145Q96MT1 663 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 RAD18Q9NS91 495 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 SLC25A37Q9NYZ2 338 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 OAZ3Q9UMX2 235 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 KANSL1LA0AUZ9 987 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 IL6P05231 212 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 GSTM1P09488 218 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 IRF8Q02556 426 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 GSTM4Q03013 218 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 NAE1Q13564 534 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 DDX39BQ13838 428 aaKnown RBP15.88■□□□□ 0.13
COL4A1-204ENST00000543140 SMU1Q2TAY7 513 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 IRAK1BP1Q5VVH5 260 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 FRG2Q64ET8 278 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 PPP4R4Q6NUP7 873 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 NEK10Q6ZWH5 1172 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 NPAS3Q8IXF0 933 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 WFIKKN2Q8TEU8 576 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 ARRDC3Q96B67 414 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 APOLD1Q96LR9 279 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 NSMCE2Q96MF7 247 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 ZNF583Q96ND8 569 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 FRG2BQ96QU4 278 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 PRPF18Q99633 342 aaKnown RBP15.88■□□□□ 0.13
COL4A1-204ENST00000543140 CENPKQ9BS16 269 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 CCM2Q9BSQ5 444 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 TBCDQ9BTW9 1192 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 DEC1Q9P2X7 70 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 SLC27A6Q9Y2P4 619 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 PCDHB3Q9Y5E6 796 aa15.88■□□□□ 0.13
COL4A1-204ENST00000543140 AP1G1O43747 822 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 GSNP06396 782 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 FAM58BPP0C7Q3 252 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 SMIM18P0DKX4 95 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 ATP6V1B1P15313 513 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 CD22P20273 847 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 PGS1Q32NB8 556 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 GGTA1PQ4G0N0 100 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 XKR6Q5GH73 641 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 C9orf64Q5T6V5 341 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 UBE2Q1Q7Z7E8 422 aa15.87■□□□□ 0.13
COL4A1-204ENST00000543140 THOC6Q86W42 341 aaKnown RBP15.87■□□□□ 0.13
COL4A1-204ENST00000543140 CHERPQ8IWX8 916 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms