RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 NRBF2Q96F24 287 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 MAGEB10Q96LZ2 347 aaPredicted RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 CPEB1Q9BZB8 566 aaKnown RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 PLGRKTQ9HBL7 147 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 SPG21Q9NZD8 308 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 HS3ST2Q9Y278 367 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 CROCCQ5TZA2 2017 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 NPIPB8E9PQR5 432 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 MPC1LP0DKB6 136 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 HNRNPFP52597 415 aaKnown RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 NEDD8Q15843 81 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 FAM117BQ6P1L5 589 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 MSANTD1Q6ZTZ1 278 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 GAREM2Q75VX8 874 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 ZCCHC7Q8N3Z6 543 aaKnown RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 BEND7Q8N7W2 519 aaPredicted RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 DRAXINQ8NBI3 349 aaPredicted RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 OR5K1Q8NHB7 308 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 SERHLQ9NQF3 203 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 DLGAP4Q9Y2H0 992 aa20.71■□□□□ 0.91
VPS28-205ENST00000526204 HEMK1Q9Y5R4 338 aaPredicted RBP20.71■□□□□ 0.91
VPS28-205ENST00000526204 SCN8AQ9UQD0 1980 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 PER2O15055 1255 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 SLC16A5O15375 505 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 ATE1O95260 518 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 GZMMP51124 257 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 PHC1P78364 1004 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 SP140Q13342 867 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 GTDC1Q4AE62 458 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 OR13F1Q8NGS4 319 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 AUTS2Q8WXX7 1259 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 VOPP1Q96AW1 172 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 ZNF641Q96N77 438 aaPredicted RBP20.7■□□□□ 0.9
VPS28-205ENST00000526204 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.7■□□□□ 0.95e-6■□□□□ 10.2
VPS28-205ENST00000526204 C3orf18Q9UK00 162 aa20.7■□□□□ 0.9
VPS28-205ENST00000526204 KCNE1BA0A087WTH5 132 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 A0A1W2PQ67 120 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SERTM1A2A2V5 107 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 WNT9AO14904 365 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 ABCB7O75027 752 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 CRHBPP24387 322 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SLC6A12P48065 614 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 TMBIM6P55061 237 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 HSPA14Q0VDF9 509 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SKIV2LQ15477 1246 aaKnown RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 C22orf39Q6P5X5 142 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 CNKSR3Q6P9H4 555 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 TMEM26Q6ZUK4 368 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 CHST15Q7LFX5 561 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 PHACTR4Q8IZ21 702 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 THAP11Q96EK4 314 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 REXO5Q96IC2 774 aaKnown RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 CAPNS2Q96L46 248 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 DCUN1D5Q9BTE7 237 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SMURF2Q9HAU4 748 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 BLOC1S6Q9UL45 172 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 FAF1Q9UNN5 650 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 SCN5AQ14524 2016 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 TRAV19A0A0A6YYK7 116 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 CARNS1A5YM72 827 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 KPNA5O15131 536 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 POP4O95707 220 aaKnown RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 LHCGRP22888 699 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 STK19P49842 368 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 TPD52P55327 224 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 SEMG2Q02383 582 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 ABHD18Q0P651 414 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 ARHGEF6Q15052 776 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 PLEKHS1Q5SXH7 462 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SPESP1Q6UW49 350 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SKA2Q8WVK7 121 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 ZNF689Q96CS4 500 aaPredicted RBP20.69■□□□□ 0.9
VPS28-205ENST00000526204 MAGED4Q96JG8 741 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 LMLNQ96KR4 655 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 MBOAT4Q96T53 435 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 EMILIN2Q9BXX0 1053 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 ADNPQ9H2P0 1102 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 SLC6A13Q9NSD5 602 aa20.69■□□□□ 0.9
VPS28-205ENST00000526204 TEX28O15482 410 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 SERPINA1P01009 418 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 LAG3P18627 525 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 CTSOP43234 321 aaPredicted RBP20.68■□□□□ 0.9
VPS28-205ENST00000526204 IST1P53990 364 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 AP1S2P56377 157 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 TOP3AQ13472 1001 aaPredicted RBP20.68■□□□□ 0.9
VPS28-205ENST00000526204 RFX4Q33E94 735 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 PTCHD3Q3KNS1 767 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 ANKRD33Q7Z3H0 272 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 HIPK1Q86Z02 1210 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 NETO1Q8TDF5 533 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 PYURFQ96I23 114 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 A0A0J9YVX5 310 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 SEC14L2O76054 403 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 ATP1B2P14415 290 aaPredicted RBP20.68■□□□□ 0.9
VPS28-205ENST00000526204 HOXB9P17482 250 aaPredicted RBP20.68■□□□□ 0.9
VPS28-205ENST00000526204 CYP2A7P20853 494 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 STT3AP46977 705 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 SPINT3P49223 89 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 PRMT2P55345 433 aa20.68■□□□□ 0.9
VPS28-205ENST00000526204 GABARAPL2P60520 117 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms