RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SLC30A3Q99726 388 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KCNS3Q9BQ31 491 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 LHPPQ9H008 270 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 OSGEPL1Q9H4B0 414 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC32A1Q9H598 525 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 OLAHQ9NV23 265 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PGAP2Q9UHJ9 254 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RUVBL1Q9Y265 456 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PCDHGB3Q9Y5G1 929 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 OR2AG2A6NM03 316 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 FADS2P1A8MWK0 482 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KDELR3O43731 214 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 AZGP1P25311 298 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 IFNGR2P38484 337 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 DPP6P42658 865 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 MAP2K4P45985 399 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ZFP69Q49AA0 526 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 IFI44LQ53G44 452 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 TMEM236Q5W0B7 351 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ENPP6Q6UWR7 440 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 MAMDC4Q6UXC1 1216 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RAB43Q86YS6 212 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RAVER1Q8IY67 606 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 GPR65Q8IYL9 337 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KRT78Q8N1N4 520 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KRTCAP2Q8N6L1 136 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 TADA1Q96BN2 335 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ITPAQ9BY32 194 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 SLC29A3Q9BZD2 475 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 RRAGCQ9HB90 399 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 KRCC1Q9NPI7 259 aaPredicted RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 ATP6V1HQ9UI12 483 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 PCTPQ9UKL6 214 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 TMA7Q9Y2S6 64 aaKnown RBP8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 DHRS7Q9Y394 339 aa8.23□□□□□ -1.09
LIMCH1-216ENST00000512820 A0A1W2PQ67 120 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PIPSLA2A3N6 862 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ATE1O95260 518 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 EBLN1P0CF75 366 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NR2F1P10589 423 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PORP16435 677 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PAICSP22234 425 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 GSTM2P28161 218 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CASP9P55211 416 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 COPZ1P61923 177 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 C2orf80Q0P641 193 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ABRAXAS2Q15018 415 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TEAD4Q15561 434 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TAB1Q15750 504 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CHRNA6Q15825 494 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ADGRF1Q5T601 910 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PSAPL1Q6NUJ1 521 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NCCRP1Q6ZVX7 275 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NEK10Q6ZWH5 1172 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 LRRTM3Q86VH5 581 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 SCAIQ8N9R8 606 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 QRFPRQ96P65 431 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CD244Q9BZW8 370 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 SERHL2Q9H4I8 314 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 SERHLQ9NQF3 203 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 RAD18Q9NS91 495 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ERVK-18Q9QC07 812 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CLCA2Q9UQC9 943 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 B4GAT1O43505 415 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NR2F6P10588 404 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 GGT1P19440 569 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PCSK6P29122 969 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 HTR6P50406 440 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NUDT6P53370 316 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 BTG3Q14201 252 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 GPR33Q49SQ1 333 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ZDHHC20Q5W0Z9 365 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 GATAD2AQ86YP4 633 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CLIP4Q8N3C7 705 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 DTWD1Q8N5C7 304 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 OR10G2Q8NGC3 310 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 NT5C3BQ969T7 300 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PSKH2Q96QS6 385 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CFAP97Q9P2B7 532 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TRAV19A0A0A6YYK7 116 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TNFRSF21O75509 655 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 GABBR2O75899 941 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 IFNW1P05000 195 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FYNP06241 537 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 ANXA8P13928 327 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CSKP41240 450 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 RAB14P61106 215 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FRG2Q64ET8 278 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CAPN13Q6MZZ7 669 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 RGL4Q8IZJ4 473 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 OR13J1Q8NGT2 312 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 VANGL1Q8TAA9 524 aaPredicted RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 PIK3R3Q92569 461 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 HSH2DQ96JZ2 352 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TEFMQ96QE5 360 aaKnown RBP8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FRG2BQ96QU4 278 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 CNPPD1Q9BV87 410 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 FNDC11Q9BVV2 318 aa8.22□□□□□ -1.09
LIMCH1-216ENST00000512820 TM9SF3Q9HD45 589 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms