RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CLMPQ9H6B4 373 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 AMBNQ9NP70 447 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GMPPBQ9Y5P6 360 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 NLRC5Q86WI3 1866 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ILVBLA1L0T0 632 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC28A1O00337 649 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 COCHO43405 550 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 RECQL5O94762 991 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 FKBP9O95302 570 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CLDN7O95471 211 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CD6P30203 668 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 GPR17Q13304 367 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 MBTPS1Q14703 1052 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ZCCHC8Q6NZY4 707 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 C17orf99Q6UX52 265 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 FKBP9P1Q75LS8 142 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PAGE2Q7Z2X7 111 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF551Q7Z340 670 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 TMEM173Q86WV6 379 aaPredicted RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 HIPK1Q86Z02 1210 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PIK3C3Q8NEB9 887 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 ATP13A3Q9H7F0 1226 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 CRLS1Q9UJA2 301 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 INTS6Q9UL03 887 aaKnown RBP9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PCDHGA10Q9Y5H3 936 aa9.04□□□□□ -0.96
LIMCH1-215ENST00000512632 PTPRDP23468 1912 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 A0A1W2PQ67 120 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SH3BGRLO75368 114 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 MASP1P48740 699 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 OXA1LQ15070 435 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SYT16Q17RD7 645 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 OR4F3Q6IEY1 312 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 NCEH1Q6PIU2 408 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 B3GNT8Q7Z7M8 397 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 APOLD1Q96LR9 279 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ACPTQ9BZG2 426 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 TMEM45AQ9NWC5 275 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 MYO16Q9Y6X6 1858 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 STK16O75716 305 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 STC2O76061 302 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CCDC159P0C7I6 412 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 BMP4P12644 408 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 MAGP20916 626 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 DGKAP23743 735 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 HMGCLP35914 325 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 DAPP51397 102 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 GABARAPL2P60520 117 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CHPFQ8IZ52 775 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ATG16L2Q8NAA4 619 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PDLIM5Q96HC4 596 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ABHD8Q96I13 439 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SYT17Q9BSW7 474 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 RNF38Q9H0F5 515 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 IL26Q9NPH9 171 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PCDHB1Q9Y5F3 818 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 GREB1Q4ZG55 1949 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 A0A1B0GVM2 712 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 OR6C75A6NL08 312 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 RFXANKO14593 260 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SYN3O14994 580 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 JRKO75564 520 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PDYNP01213 254 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ALDH2P05091 517 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 LCKP06239 509 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CLK3P49761 638 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF157P51786 506 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 MAD2L1Q13257 205 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CHRNA6Q15825 494 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 USP39Q53GS9 565 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ARMC12Q5T9G4 340 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CXorf57Q6NSI4 855 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 P2RY8Q86VZ1 359 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CADM3Q8N126 398 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 GLB1L3Q8NCI6 653 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 HPS1Q92902 700 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CPPED1Q9BRF8 314 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 MROQ9BYG7 248 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 TRIT1Q9H3H1 467 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 EPS8L2Q9H6S3 715 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SERHLQ9NQF3 203 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 AASDHPPTQ9NRN7 309 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ARL15Q9NXU5 204 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PDP1Q9P0J1 537 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM8A1Q9UBU6 413 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 RBMX2Q9Y388 322 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SH3BP1Q9Y3L3 701 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 PCDHGA4Q9Y5G9 962 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 TDRD15B5MCY1 1934 aaKnown RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 RETP07949 1114 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ZDHHC11BP0C7U3 371 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 CYBAP13498 195 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 HECTD3Q5T447 861 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF621Q6ZSS3 439 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 DPH2Q9BQC3 489 aaPredicted RBP9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 HEPHQ9BQS7 1158 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 EBPLQ9BY08 206 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ZFYVE1Q9HBF4 777 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 ATAD3AQ9NVI7 634 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 SCN3BQ9NY72 215 aa9.03□□□□□ -0.96
LIMCH1-215ENST00000512632 B3GNT3Q9Y2A9 372 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms