RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CHID1Q9BWS9 393 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 PBX4Q9BYU1 374 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 KCNH6Q9H252 994 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 ZNF576Q9H609 170 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 MAGIXQ9H6Y5 334 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 CAAP1Q9H8G2 361 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 CXXC1Q9P0U4 656 aaPredicted RBP11.69□□□□□ -0.54
NUP54-202ENST00000502850 DKK3Q9UBP4 350 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 MAN2B2Q9Y2E5 1009 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 INSL6Q9Y581 213 aa11.69□□□□□ -0.54
NUP54-202ENST00000502850 A0A096LPI6 279 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ELOVL7A1L3X0 281 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 CCDC160A6NGH7 325 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 C16orf96A6NNT2 1141 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 FAM220BPB1ANY3 271 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 GFYI3L273 518 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 CLOCKO15516 846 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RETP07949 1114 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SRPRAP08240 638 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 GSTM1P09488 218 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 HNRNPA1P09651 372 aaKnown RBP eCLIP11.68□□□□□ -0.54
NUP54-202ENST00000502850 IL1RNP18510 177 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 S100A3P33764 101 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PBX2P40425 430 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 DGKQP52824 942 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 MTPNP58546 118 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ESRRGP62508 458 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 HMGCS1Q01581 520 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 GSTM4Q03013 218 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 LSAMPQ13449 338 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 GK3PQ14409 553 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 LIPJQ5W064 366 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 TTC33Q6PID6 262 aaPredicted RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ABRAXAS1Q6UWZ7 409 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 KIAA0907Q7Z7F0 614 aaPredicted RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 RIMKLAQ8IXN7 391 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 DTWD1Q8N5C7 304 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 OR2A12Q8NGT7 310 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 WFIKKN2Q8TEU8 576 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 VOPP1Q96AW1 172 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 FBXL8Q96CD0 374 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RNF145Q96MT1 663 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 VPS35Q96QK1 796 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 OR52E6Q96RD3 313 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 FAM83CQ9BQN1 747 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 THUMPD3Q9BV44 507 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ACPTQ9BZG2 426 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RBM38Q9H0Z9 239 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 SLAMF8Q9P0V8 285 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 MSRAQ9UJ68 235 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ERVW-1Q9UQF0 538 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 FAM149AA5PLN7 773 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PSMD11O00231 422 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 DLL1O00548 723 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 EI24O14681 340 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ACOX3O15254 700 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PRSS23O95084 383 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 BCKDHAP12694 445 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 HSD3B1P14060 373 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 FOSL2P15408 326 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 HSD3B2P26439 372 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 TTKP33981 857 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PNLIPRP1P54315 467 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ABRQ12979 859 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 GRIN2CQ14957 1233 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 TEAD2Q15562 447 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RAB30Q15771 203 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ZNF77Q15935 545 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 CPSF6Q16630 551 aaKnown RBP eCLIP11.68□□□□□ -0.54
NUP54-202ENST00000502850 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.68□□□□□ -0.54
NUP54-202ENST00000502850 SYTL3Q4VX76 610 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RUNDC3AQ59EK9 446 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SGO1Q5FBB7 561 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SPANXN4Q5MJ08 99 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 LRIF1Q5T3J3 769 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 THEMIS2Q5TEJ8 643 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ERAP2Q6P179 960 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 DPPA4Q7L190 304 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PATL1Q86TB9 770 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ADIPOR2Q86V24 386 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 NRSN1Q8IZ57 195 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SVOPLQ8N434 492 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 METTL25Q8N6Q8 603 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ZNF548Q8NEK5 533 aaPredicted RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 MAFAQ8NHW3 353 aaPredicted RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ZFP28Q8NHY6 868 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 PNPT1Q8TCS8 783 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ELMO1Q92556 727 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 GLMNQ92990 594 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 VPS50Q96JG6 964 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 ZNF583Q96ND8 569 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SEPHS2Q99611 448 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 SMG9Q9H0W8 520 aaKnown RBP11.68□□□□□ -0.54
NUP54-202ENST00000502850 ZFP14Q9HCL3 533 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 OLAHQ9NV23 265 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 VAPAQ9P0L0 249 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 DPP7Q9UHL4 492 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 INVSQ9Y283 1065 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 RWDD3Q9Y3V2 267 aa11.68□□□□□ -0.54
NUP54-202ENST00000502850 KCNE1BA0A087WTH5 132 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms