RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 PPM1MQ96MI6 270 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 ZNF347Q96SE7 839 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 TRIT1Q9H3H1 467 aaKnown RBP11.23□□□□□ -0.61
RFC4-214ENST00000494047 KAT8Q9H7Z6 458 aaKnown RBP11.23□□□□□ -0.61
RFC4-214ENST00000494047 RC3H2Q9HBD1 1191 aaKnown RBP11.23□□□□□ -0.61
RFC4-214ENST00000494047 TM9SF3Q9HD45 589 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 FAM118AQ9NWS6 357 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 MARCH5Q9NX47 278 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 LIMD1Q9UGP4 676 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 EBF1Q9UH73 591 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 SH3GLB1Q9Y371 365 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 CCL27Q9Y4X3 112 aa11.23□□□□□ -0.61
RFC4-214ENST00000494047 TRBV5-3A0A0A0MS03 114 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 MYOCOSA0A1B0GUC4 107 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 AGAP14A8MT82 685 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 C5orf67F2Z3F1 127 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 UPK1AO00322 258 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 MANBAO00462 879 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PLOD2O00469 737 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 COCHO43405 550 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 SEC22BO75396 215 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 EIF2S1P05198 315 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 HNRNPCP07910 306 aaKnown RBP eCLIP11.22□□□□□ -0.61
RFC4-214ENST00000494047 ATF6P18850 670 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PRPS1L1P21108 318 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 IL12AP29459 219 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PRDX3P30048 256 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 ASMTP46597 345 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CDH15P55291 814 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ARPP19P56211 112 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 RPS14P62263 151 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 VEZF1Q14119 521 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 FAM174BQ3ZCQ3 159 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PLEKHS1Q5SXH7 462 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 OTUD3Q5T2D3 398 aaPredicted RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 ZNF691Q5VV52 312 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TPGS1Q6ZTW0 290 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TMEM26Q6ZUK4 368 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 USP45Q70EL2 814 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CALHM3Q86XJ0 350 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CPXM2Q8N436 756 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 VPS37AQ8NEZ2 397 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TBC1D15Q8TC07 691 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CHPT1Q8WUD6 406 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 FBLIM1Q8WUP2 373 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 LINC01599Q8WXQ3 324 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 MUL1Q969V5 352 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TMIGD2Q96BF3 282 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CXorf40BQ96DE9 158 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 VMP1Q96GC9 406 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PYURFQ96I23 114 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TMEM74Q96NL1 305 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 MUS81Q96NY9 551 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 OR52E6Q96RD3 313 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 NODALQ96S42 347 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ACOX2Q99424 681 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 KLF16Q9BXK1 252 aaPredicted RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 ADNPQ9H2P0 1102 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 TOR3AQ9H497 397 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ACTL8Q9H568 366 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ELOVL6Q9H5J4 265 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ASB8Q9H765 288 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 NTN4Q9HB63 628 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 SARS2Q9NP81 518 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 FAM120CQ9NX05 1096 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 ZDHHC3Q9NYG2 299 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 DNMT3BQ9UBC3 853 aaKnown RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 GIMAP2Q9UG22 337 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ENPP5Q9UJA9 477 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 ZNF490Q9ULM2 529 aaPredicted RBP11.22□□□□□ -0.61
RFC4-214ENST00000494047 CDC14AQ9UNH5 594 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 PCDHB9Q9Y5E1 797 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 MTCH2Q9Y6C9 303 aa11.22□□□□□ -0.61
RFC4-214ENST00000494047 CHD9Q3L8U1 2897 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 LOC100130705A0A1B0GUX0 176 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 CREG1O75629 220 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 MYO1DO94832 1006 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 AP2A2O94973 939 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 NCK1P16333 377 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 JUNDP17535 347 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 CTPS1P17812 591 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 DDX5P17844 614 aaKnown RBP11.21□□□□□ -0.61
RFC4-214ENST00000494047 BMPR1AP36894 532 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 RPL3P39023 403 aaKnown RBP11.21□□□□□ -0.61
RFC4-214ENST00000494047 RGRP47804 291 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 CD97P48960 835 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 SLC11A1P49279 550 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 GALK1P51570 392 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 MTPNP58546 118 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 SNRPD1P62314 119 aaKnown RBP11.21□□□□□ -0.61
RFC4-214ENST00000494047 RPS24P62847 133 aaKnown RBP11.21□□□□□ -0.61
RFC4-214ENST00000494047 PHEXP78562 749 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 PTPRCAPQ14761 206 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 ABRAXAS2Q15018 415 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 TEAD4Q15561 434 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 NEDD8Q15843 81 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 DGUOKQ16854 277 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 USP39Q53GS9 565 aaKnown RBP11.21□□□□□ -0.61
RFC4-214ENST00000494047 GPRC6AQ5T6X5 926 aa11.21□□□□□ -0.61
RFC4-214ENST00000494047 TMEM214Q6NUQ4 689 aaKnown RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms