RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CST5P28325 142 aaPredicted RBP10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HNRNPFP52597 415 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 BNIP2Q12982 314 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLEKHG6Q3KR16 790 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LEMD2Q8NC56 503 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FBXO30Q8TB52 745 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TSGA13Q96PP4 275 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MTERF1Q99551 399 aaKnown RBP10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 UNC80Q8N2C7 3258 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 A0A0J9YYE9 177 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZW10O43264 779 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF682O95780 498 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GBAP04062 536 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AQP1P29972 269 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ADSLP30566 484 aaPredicted RBP10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC26A3P40879 764 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GPR1P46091 355 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DIO3P55073 304 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IRF8Q02556 426 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 INSCQ1MX18 579 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 KLHL12Q53G59 568 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NANOGP8Q6NSW7 305 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GPRIN3Q6ZVF9 776 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GAREM2Q75VX8 874 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SNX29P2Q8IUI4 249 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ATG16L2Q8NAA4 619 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C19orf18Q8NEA5 215 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR8H1Q8NGG4 311 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TBC1D15Q8TC07 691 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TOP1MTQ969P6 601 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EBPLQ9BY08 206 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC46A2Q9BY10 475 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DEC1Q9P2X7 70 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SEC16AO15027 2179 aa10.52□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 A0A0G2JN53 185 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TNFRSF10AO00220 468 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DYRK3O43781 588 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TMCC2O75069 709 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MSL3P1P0C860 447 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 THRBP10828 461 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PTPN2P17706 415 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PREPP48147 710 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PSMD8P48556 350 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SMARCB1Q12824 385 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SEMA3BQ13214 749 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.51□□□□□ -0.736e-7■■■■□ 21
MSH5-SAPCD1-207ENST00000493662 UBE2R2Q712K3 238 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MDGA1Q8NFP4 955 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLD4Q96BZ4 506 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PGAP3Q96FM1 320 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PSKH2Q96QS6 385 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC29A1Q99808 456 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SOX17Q9H6I2 414 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DIABLOQ9NR28 239 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CCDC59Q9P031 241 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PCDHGA10Q9Y5H3 936 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NOX1Q9Y5S8 564 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 U3KQV3 271 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 RBBP6Q7Z6E9 1792 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CASP8AP2Q9UKL3 1982 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CCDC154A6NI56 674 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SLC31A1O15431 190 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 S1PR4O95977 384 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR56A5P0C7T3 313 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 EPB42P16452 691 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF37AP17032 561 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LBPP18428 481 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PRDX3P30048 256 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 MS4A2Q01362 244 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PSRC1Q6PGN9 363 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PLEKHG7Q6ZR37 379 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PHACTR4Q8IZ21 702 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ADGRG2Q8IZP9 1017 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CLYBLQ8N0X4 340 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 AP2M1Q96CW1 435 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 APOLD1Q96LR9 279 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DPY30Q9C005 99 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR2B2Q9GZK3 357 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ADPRHL2Q9NX46 363 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SPATA2Q9UM82 520 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 TTC34A8MYJ7 566 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF701M0R085 212 aaPredicted RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 ZNF197O14709 1029 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PDE9AO76083 593 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 FADS2O95864 444 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 HNF1BP35680 557 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 DGKQP52824 942 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 LRP8Q14114 963 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 GCNT7Q6ZNI0 430 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 PIWIL3Q7Z3Z3 882 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 CFAP206Q8IYR0 622 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 STX19Q8N4C7 294 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NKAPQ8N5F7 415 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 OR13J1Q8NGT2 312 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NEURL2Q9BR09 285 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 NAA50Q9GZZ1 169 aaKnown RBP10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 C8orf4Q9NR00 106 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 SMOXQ9NWM0 555 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 IMPAD1Q9NX62 359 aa10.51□□□□□ -0.73
MSH5-SAPCD1-207ENST00000493662 B4GALT6Q9UBX8 382 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms