RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 COQ6Q9Y2Z9 468 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 COL4A3Q01955 1670 aa20.55■□□□□ 0.88
CCDC88B-208ENST00000492980 EDDM13A0A1B0GTR0 161 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 C7orf72A4D263 438 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 AP1G1O43747 822 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 KCNH1O95259 989 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 PRPH2P23942 346 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 SOX11P35716 441 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 PLIN5Q00G26 463 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 CYP51A1Q16850 503 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 AASDHQ4L235 1098 aaPredicted RBP20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 CYP2U1Q7Z449 544 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 CLHC1Q8NHS4 586 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 OR8D1Q8WZ84 308 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 SLC29A1Q99808 456 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 CIB1Q99828 191 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 PIF1Q9H611 641 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 AGPAT4Q9NRZ5 378 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 DLGAP4Q9Y2H0 992 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 KIAA1549LQ6ZVL6 1849 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 SOD1P00441 154 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 IL6P05231 212 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 MAP4P27816 1152 aaKnown RBP20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 ERVK-21P61565 698 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 TMEM220Q6QAJ8 160 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 SFTPA1Q8IWL2 248 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 OR8J3Q8NGG0 315 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 FGF13Q92913 245 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 FOXJ1Q92949 421 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 SAMD11Q96NU1 681 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 VAPAQ9P0L0 249 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 PCDHB3Q9Y5E6 796 aa20.54■□□□□ 0.88
CCDC88B-208ENST00000492980 HEPACAM2A8MVW5 462 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 DFNA5O60443 496 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 PGRP06401 933 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 HALP42357 657 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 NRIP1P48552 1158 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 RPS14P62263 151 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 PRKCQQ04759 706 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CHIT1Q13231 466 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 EIF4HQ15056 248 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 DUSP6Q16828 381 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 RNF220Q5VTB9 566 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 NLRP8Q86W28 1048 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 PROSER1Q86XN7 944 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 ST13P4Q8IZP2 240 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 DNAJC5GQ8N7S2 189 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 MAGEB10Q96LZ2 347 aaPredicted RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CNBD2Q96M20 576 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 RPF2Q9H7B2 306 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 SFXN1Q9H9B4 322 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 PCDHGB4Q9UN71 923 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 PCDHGB5Q9Y5G0 923 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 SERTM1A2A2V5 107 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 NPIPB8E9PQR5 432 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 MAP3K13O43283 966 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 JUPP14923 745 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CKMT2P17540 419 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 FSHRP23945 695 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 MAPKAPK3Q16644 382 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CCSMST1Q4G0I0 132 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 SLC22A15Q8IZD6 547 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 TRPV3Q8NET8 790 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CMTM7Q96FZ5 175 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 CERS4Q9HA82 394 aa20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 GEMIN8Q9NWZ8 242 aaKnown RBP20.53■□□□□ 0.88
CCDC88B-208ENST00000492980 KIF26AQ9ULI4 1882 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 PLK4O00444 970 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 AREL1O15033 823 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 PSMC3P17980 439 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 BDKRB1P46663 353 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 ELP6Q0PNE2 266 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 GK3PQ14409 553 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 ELAVL3Q14576 367 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 ZNF234Q14588 700 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 ZNF658BQ4V348 819 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 FRG2Q64ET8 278 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 THOC6Q86W42 341 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 PAPD5Q8NDF8 572 aaKnown RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 CCDC138Q96M89 665 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 FRG2BQ96QU4 278 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 FAM129BQ96TA1 746 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 HPS4Q9NQG7 708 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 STOX2Q9P2F5 926 aaPredicted RBP20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 MAGEL2Q9UJ55 1249 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 ANAPC2Q9UJX6 822 aa20.52■□□□□ 0.88
CCDC88B-208ENST00000492980 TPST1O60507 370 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 RECQL5O94762 991 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 CATP04040 527 aaKnown RBP20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 UMPSP11172 480 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 PRPS2P11908 318 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 CD22P20273 847 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 FASP25445 335 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 PBLDP30039 288 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 CLDN8P56748 225 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 C9orf50Q5SZB4 431 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 FOXB2Q5VYV0 432 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 LIPJQ5W064 366 aa20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 NAIF1Q69YI7 327 aaPredicted RBP20.51■□□□□ 0.87
CCDC88B-208ENST00000492980 PPP4R4Q6NUP7 873 aa20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms