RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ALOX12BO75342 701 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 USP1O94782 785 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 HPP00738 406 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 TPM3P06753 285 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 COMTP21964 271 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 FDXRP22570 491 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 ADRA1AP35348 466 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 NSG1P42857 185 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 FOXL2P58012 376 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 RBPJQ06330 500 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 IQCB1Q15051 598 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 ASTE1Q2TB18 679 aaPredicted RBP12.09□□□□□ -0.47
SKA3-206ENST00000475251 FAM214AQ32MH5 1076 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 SYTL3Q4VX76 610 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 GFRALQ6UXV0 394 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 LINC00696Q6ZRV3 163 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 SERPINA9Q86WD7 417 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 CCDC50Q8IVM0 306 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 OR11G2Q8NGC1 345 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 OR1N1Q8NGS0 311 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 FLVCR1-AS1Q8TAF5 88 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 CCDC110Q8TBZ0 833 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 ITLN2Q8WWU7 325 aaPredicted RBP12.09□□□□□ -0.47
SKA3-206ENST00000475251 NR4A3Q92570 626 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 LURAP1Q96LR2 239 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 LUC7LQ9NQ29 371 aaKnown RBP12.09□□□□□ -0.47
SKA3-206ENST00000475251 CUTCQ9NTM9 273 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.09□□□□□ -0.47
SKA3-206ENST00000475251 APCP25054 2843 aa12.09□□□□□ -0.47
SKA3-206ENST00000475251 TRGV8A0A0C4DH27 118 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 CCDC78A2IDD5 438 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 H7C0C1 242 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 H7C0S8 307 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 MAP2K7O14733 419 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ZNF189O75820 626 aaPredicted RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 KRT38O76015 456 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ZRANB2O95218 330 aaKnown RBP eCLIP12.08□□□□□ -0.48
SKA3-206ENST00000475251 CRYABP02511 175 aaKnown RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 RPN2P04844 631 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 CTSBP07858 339 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 MYBL2P10244 700 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ACPPP15309 386 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 MAGP20916 626 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ACADLP28330 430 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 HTR1EP28566 365 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 GCGRP47871 477 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ATP5OP48047 213 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 RAB28P51157 221 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 CASP6P55212 293 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 CACNG1Q06432 222 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ZNF630Q2M218 657 aaPredicted RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 ZNF324BQ6AW86 544 aaPredicted RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 TMEM207Q6UWW9 146 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 NLRP9Q7RTR0 991 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 MRGPRGQ86SM5 289 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 MCATQ8IVS2 390 aaKnown RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 KBTBD2Q8IY47 623 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 RCOR2Q8IZ40 523 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 CLDN19Q8N6F1 224 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 OR8K1Q8NGG5 319 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 ELMO1Q92556 727 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 HAUS1Q96CS2 278 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 APOL2Q9BQE5 337 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 SOX17Q9H6I2 414 aaPredicted RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.08□□□□□ -0.48
SKA3-206ENST00000475251 ZGRF1Q86YA3 2104 aa12.08□□□□□ -0.48
SKA3-206ENST00000475251 C2CD3Q4AC94 2353 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 hCG_1818297A0A087WSY0 165 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 VSTM2BA6NLU5 285 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 APOC4-APOC2K7ER74 178 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CCL21O00585 134 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 FKBP9O95302 570 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 APOC2P02655 101 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 UQCRHP07919 91 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 RBL1P28749 1068 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 TDGF1P3P51864 188 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 KCNK10P57789 538 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 AP2B1P63010 937 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 OCA2Q04671 838 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 TRIM14Q14142 442 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 ITIH4Q14624 930 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 TCEAL1Q15170 157 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 DNAJC21Q5F1R6 531 aaKnown RBP12.07□□□□□ -0.48
SKA3-206ENST00000475251 CCDC181Q5TID7 509 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 XKRXQ6PP77 449 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 COX15Q7KZN9 410 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CDKL3Q8IVW4 592 aaPredicted RBP12.07□□□□□ -0.48
SKA3-206ENST00000475251 KATNAL2Q8IYT4 538 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CATSPER1Q8NEC5 780 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 DOCK10Q96BY6 2186 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CCDC120Q96HB5 630 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CCDC42Q96M95 316 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 ALS2CR12Q96Q35 445 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 TBL1YQ9BQ87 522 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 GORASP1Q9BQQ3 440 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 CRB3Q9BUF7 120 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 ARNT2Q9HBZ2 717 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 ENAMQ9NRM1 1142 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 SMARCAL1Q9NZC9 954 aa12.07□□□□□ -0.48
SKA3-206ENST00000475251 INTUQ9ULD6 942 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms