RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 C10orf62Q5T681 223 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PPP2R2DQ66LE6 453 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PID1Q7Z2X4 250 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 MICU2Q8IYU8 434 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 GHDCQ8N2G8 530 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CDYL2Q8N8U2 506 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 GRPEL2Q8TAA5 225 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 INSM2Q96T92 566 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 COQ7Q99807 217 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SPON2Q9BUD6 331 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 C1QTNF7Q9BXJ2 289 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 WBP11Q9Y2W2 641 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF451Q9Y4E5 1061 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TNS1Q9HBL0 1735 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 OR6C65A6NJZ3 312 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 M0QZQ0 153 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 HMGCS2P54868 508 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF235Q14590 738 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 EFCAB12Q6NXP0 572 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 LAYNQ6UX15 382 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF598Q86UK7 904 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PSMA8Q8TAA3 256 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 WDR34Q96EX3 536 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SCMH1Q96GD3 660 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 LRCH3Q96II8 777 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM165Q9HC07 324 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 KCNE1BA0A087WTH5 132 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 SMIM28A0A1B0GU29 152 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PRAMEF25A6NGN4 478 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PLA2G10O15496 165 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 C1QBP02746 253 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CFPP27918 469 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CLK3P49761 638 aaKnown RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 AGKQ53H12 422 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CERCAMQ5T4B2 595 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF618Q5T7W0 954 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CRTC3Q6UUV7 619 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF782Q6ZMW2 699 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM179BQ7Z7N9 219 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PEX5LQ8IYB4 626 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM86AQ8N2M4 240 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 HASPINQ8TF76 798 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TMCO6Q96DC7 493 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF649Q9BS31 505 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TTLL2Q9BWV7 592 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 TEX12Q9BXU0 123 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 CBLCQ9ULV8 474 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 INVSQ9Y283 1065 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHGB6Q9Y5F9 930 aa5.23□□□□□ -1.57
SYNE1-220ENST00000471834 IGLV3-16A0A075B6K0 115 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 A0A0G2JMP0 313 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SH3D21A4FU49 640 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SOAT2O75908 522 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 EPN2O95208 641 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MAP3K6O95382 1288 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CD53P19397 219 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CYP2A7P20853 494 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 GRK5P34947 590 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 HK3P52790 923 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PPIGQ13427 754 aaKnown RBP eCLIP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZRANB3Q5FWF4 1079 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SYPL2Q5VXT5 272 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 IDO2Q6ZQW0 420 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 DEFB128Q7Z7B8 93 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CACTIN-AS1Q8N1I8 211 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MTFMTQ96DP5 389 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TOE1Q96GM8 510 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TEX37Q96LM6 180 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RNF145Q96MT1 663 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CDK5RAP1Q96SZ6 601 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 EXO5Q9H790 373 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CAB39LQ9H9S4 337 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CRTAC1Q9NQ79 661 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLCO3A1Q9UIG8 710 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 OGDHLQ9ULD0 1010 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RNF103-CHMP3A0A140T963 221 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CLCA1A8K7I4 914 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 UROSP10746 265 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RPL10P27635 214 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CPT1AP50416 773 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CDH8P55286 799 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CLDN8P56748 225 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ALDH6A1Q02252 535 aaKnown RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 GRB7Q14451 532 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 LEXMQ3ZCV2 418 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CCBE1Q6UXH8 406 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 GLRX5Q86SX6 157 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 PLD3Q8IV08 490 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SHDQ96IW2 340 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 RTP3Q9BQQ7 232 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 TRPS1Q9UHF7 1281 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SBF1O95248 1867 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 KCNH1O95259 989 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF682O95780 498 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 ALBP02768 609 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 VTNP04004 478 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 CBLP22681 906 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 HOXD9P28356 352 aaPredicted RBP5.22□□□□□ -1.57
SYNE1-220ENST00000471834 MNDAP41218 407 aa5.22□□□□□ -1.57
SYNE1-220ENST00000471834 SLC6A12P48065 614 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms