RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 SOHLH2Q9NX45 425 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 NSMCE4AQ9NXX6 385 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 OR6C2Q9NZP2 312 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 SEMA5BQ9P283 1151 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 TXNDC16Q9P2K2 825 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 DKK4Q9UBT3 224 aa11.27□□□□□ -0.61
CUX1-207ENST00000465461 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.27□□□□□ -0.61
CUX1-207ENST00000465461 CORO1CQ9ULV4 474 aaPredicted RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 V9GYY5 206 aaPredicted RBP11.27□□□□□ -0.61
CUX1-207ENST00000465461 A0A1W2PPV9 198 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 TMEM8BA6NDV4 472 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 SRRM3A6NNA2 597 aaPredicted RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 B4E171 279 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 GFYI3L273 518 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 MYO1CO00159 1063 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 POLR1CO15160 346 aaPredicted RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 TOX3O15405 576 aaPredicted RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 HCRTR1O43613 425 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 ZBTB14O43829 449 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 KDM1AO60341 852 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 SPAG6O75602 509 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 TIAF1O95411 115 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 CATP04040 527 aaKnown RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 ENO3P13929 434 aaPredicted RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 ZNF28P17035 718 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 MAP4P27816 1152 aaKnown RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 ITPKBP27987 946 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 CCNFP41002 786 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 TSPAN7P41732 249 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 RGS4P49798 205 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 ERVPABLB-1P60509 514 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 IL2P60568 153 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 SRSF6Q13247 344 aaKnown RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 BMPR2Q13873 1038 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 USP10Q14694 798 aaKnown RBP11.26□□□□□ -0.61
CUX1-207ENST00000465461 PHKG1Q16816 387 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 DCAF12Q5T6F0 453 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 GRTP1Q5TC63 336 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 PRAMEF17Q5VTA0 474 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 IGF2-ASQ6U949 168 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 CLEC14AQ86T13 490 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 RELL1Q8IUW5 271 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 RASGRP3Q8IV61 690 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 MAGEC3Q8TD91 643 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 CD180Q99467 661 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 ACAT2Q9BWD1 397 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 FAM129AQ9BZQ8 928 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 TWSG1Q9GZX9 223 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 ANKZF1Q9H8Y5 726 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 FAM60AQ9NP50 221 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 FBXO8Q9NRD0 319 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 C1GALT1Q9NS00 363 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 PDE10AQ9Y233 779 aa11.26□□□□□ -0.61
CUX1-207ENST00000465461 FRYQ5TBA9 3013 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 A0A0J9YY10 115 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 TEX51A0A1B0GUA7 166 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 NPEPPSL1A6NEC2 478 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 CDC7O00311 574 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 MATN2O00339 956 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 NVLO15381 856 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 PRICKLE3O43900 615 aaPredicted RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 NRP2O60462 931 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 ZBTB11O95625 1053 aaPredicted RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 SLC16A8O95907 504 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 CTSBP07858 339 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 ATXN8OSP0DMR3 200 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 ZNF37AP17032 561 aaPredicted RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 PHBP35232 272 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 SLC12A2P55011 1212 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 PCBP4P57723 403 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 HSD11B2P80365 405 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 TUBB3Q13509 450 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 KIR2DS3Q14952 304 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 SLMAPQ14BN4 828 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 SF1Q15637 639 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 CYP2A13Q16696 494 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 DEFB110Q30KQ9 67 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 MROH9Q5TGP6 573 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 TMEM164Q5U3C3 297 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 KIAA1614Q5VZ46 1190 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 C19orf48Q6RUI8 117 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 CDHR3Q6ZTQ4 885 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 CMC1Q7Z7K0 106 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 D2HGDHQ8N465 521 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 ZNF480Q8WV37 535 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 HNRNPLLQ8WVV9 542 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 ALKBH8Q96BT7 664 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 GPR22Q99680 433 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 MIPEPQ99797 713 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 PITPNM3Q9BZ71 974 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 ATG10Q9H0Y0 220 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 GPAMQ9HCL2 828 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 UTP6Q9NYH9 597 aaKnown RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 SPATA7Q9P0W8 599 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.25□□□□□ -0.61
CUX1-207ENST00000465461 LNPEPQ9UIQ6 1025 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 PCDHGA7Q9Y5G6 932 aa11.25□□□□□ -0.61
CUX1-207ENST00000465461 HMX2A2RU54 273 aa11.24□□□□□ -0.61
CUX1-207ENST00000465461 POC1B-GALNT4F8VUJ3 575 aa11.24□□□□□ -0.61
CUX1-207ENST00000465461 EIF3FO00303 357 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms