RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 VRK3Q8IV63 474 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 CFAP61Q8NHU2 1237 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 FBF1Q8TES7 1133 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 INPP5DQ92835 1189 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 TGM7Q96PF1 710 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 NDNQ99608 321 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 TRIM4Q9C037 500 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 ZNF768Q9H5H4 540 aaKnown RBP17.19■□□□□ 0.34
COL7A1-205ENST00000465238 KIR3DX1Q9H7L2 352 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 TXNDC16Q9P2K2 825 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 KLHL42Q9P2K6 505 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 GALPQ9UBC7 116 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 SLC24A2Q9UI40 661 aa17.19■□□□□ 0.34
COL7A1-205ENST00000465238 CORO1CQ9ULV4 474 aaPredicted RBP17.19■□□□□ 0.34
COL7A1-205ENST00000465238 STAT5AP42229 794 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 SKIV2L2P42285 1042 aaKnown RBP17.18■□□□□ 0.34
COL7A1-205ENST00000465238 CAPZBP47756 277 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 CLCN7P51798 805 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 CDC20Q12834 499 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 ILF2Q12905 390 aaKnown RBP17.18■□□□□ 0.34
COL7A1-205ENST00000465238 IL11RAQ14626 422 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 SLMAPQ14BN4 828 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 CRTC2Q53ET0 693 aaPredicted RBP17.18■□□□□ 0.34
COL7A1-205ENST00000465238 KLHL35Q6PF15 583 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 CTAGE3PQ8IX95 158 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 GPATCH11Q8N954 259 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 SIDT2Q8NBJ9 832 aaKnown RBP17.18■□□□□ 0.34
COL7A1-205ENST00000465238 ACVR1CQ8NER5 493 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 STARD8Q92502 1023 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 ZDHHC12Q96GR4 267 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 FOPNLQ96NB1 174 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 GPR21Q99679 349 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 ULBP3Q9BZM4 244 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 SMYD2Q9NRG4 433 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 TAS2R13Q9NYV9 303 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 NINJ2Q9NZG7 142 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 POLG2Q9UHN1 485 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 TRMT6Q9UJA5 497 aaKnown RBP17.18■□□□□ 0.34
COL7A1-205ENST00000465238 DHRS7Q9Y394 339 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 PSAT1Q9Y617 370 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 FLNCQ14315 2725 aa17.18■□□□□ 0.34
COL7A1-205ENST00000465238 FAM159BA6NKW6 160 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 CXorf49A8MYA2 514 aaPredicted RBP17.17■□□□□ 0.34
COL7A1-205ENST00000465238 RASSF9O75901 435 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 PIAS1O75925 651 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 RPN2P04844 631 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 PRKAR1AP10644 381 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 ATP5DP30049 168 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 SEPHS1P49903 392 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 PRKG2Q13237 762 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 ACSBG2Q5FVE4 666 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 RBM20Q5T481 1227 aaKnown RBP17.17■□□□□ 0.34
COL7A1-205ENST00000465238 FAM45BPQ6NSW5 357 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 UNC5DQ6UXZ4 953 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 PRSS42Q7Z5A4 293 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 ZC3HC1Q86WB0 502 aaKnown RBP17.17■□□□□ 0.34
COL7A1-205ENST00000465238 TBC1D21Q8IYX1 336 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 PPM1NQ8N819 430 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 OR5AR1Q8NGP9 310 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 FAM45AQ8TCE6 357 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 LCN9Q8WX39 176 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 RSC1A1Q92681 617 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 OR6C1Q96RD1 312 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 HGH1Q9BTY7 390 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 RAB33BQ9H082 229 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 CDC42EP4Q9H3Q1 356 aaKnown RBP17.17■□□□□ 0.34
COL7A1-205ENST00000465238 EPHA6Q9UF33 1036 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 TDRKHQ9Y2W6 561 aaKnown RBP17.17■□□□□ 0.34
COL7A1-205ENST00000465238 MED16Q9Y2X0 877 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 VWA7Q9Y334 891 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 MAST4O15021 2626 aa17.17■□□□□ 0.34
COL7A1-205ENST00000465238 KDM1AO60341 852 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 TCN2P20062 427 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 NAB1Q13506 487 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 KBTBD12Q3ZCT8 623 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 HECTD2Q5U5R9 776 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 CYB5D1Q6P9G0 228 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 TTC23LQ6PF05 361 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 C6orf15Q6UXA7 325 aaPredicted RBP17.16■□□□□ 0.34
COL7A1-205ENST00000465238 EIF1ADQ8N9N8 165 aaKnown RBP17.16■□□□□ 0.34
COL7A1-205ENST00000465238 OR4E2Q8NGC2 313 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 OR5K2Q8NHB8 316 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 APOBEC4Q8WW27 367 aaKnown RBP17.16■□□□□ 0.34
COL7A1-205ENST00000465238 KLHL6Q8WZ60 621 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 ELMO2Q96JJ3 720 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 SLC30A3Q99726 388 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 CPNE1Q99829 537 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 RHOJQ9H4E5 214 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 TSR3Q9UJK0 312 aaKnown RBP17.16■□□□□ 0.34
COL7A1-205ENST00000465238 PTPN13Q12923 2485 aa17.16■□□□□ 0.34
COL7A1-205ENST00000465238 ACSL3O95573 720 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CBSLP0DN79 551 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 ENO3P13929 434 aaPredicted RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 ZNF28P17035 718 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 SAT1P21673 171 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CD9P21926 228 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 MCM3P25205 808 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 OAS2P29728 719 aaKnown RBP17.15■□□□□ 0.34
COL7A1-205ENST00000465238 CBSP35520 551 aa17.15■□□□□ 0.34
COL7A1-205ENST00000465238 GP5P40197 560 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms