RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 COL13A1Q5TAT6 717 aaPredicted RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 CHST15Q7LFX5 561 aaPredicted RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 MILR1Q7Z6M3 343 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ZC3H7AQ8IWR0 971 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 PACRGLQ8N7B6 248 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 OR4F6Q8NGB9 312 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ZNF382Q96SR6 550 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 WRAP53Q9BUR4 548 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 RIC8BQ9NVN3 520 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 WASH3PC4AMC7 463 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 CFAP99D6REC4 459 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 FFAR3O14843 346 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 GPR42O15529 346 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ELFN1P0C7U0 828 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 HLA-EP13747 358 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ZNF30P17039 623 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 MSH3P20585 1137 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 PIK3CGP48736 1102 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 EIF2B2P49770 351 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 NFATC3Q12968 1075 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ACOX1Q15067 660 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 RGS21Q2M5E4 152 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ZNF284Q2VY69 593 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ATP6AP1LQ52LC2 224 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ZNF805Q5CZA5 627 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 INTS11Q5TA45 600 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 PDE12Q6L8Q7 609 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 TERB1Q8NA31 727 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 FGF13Q92913 245 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ALPK3Q96L96 1907 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 RIOK2Q9BVS4 552 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 NUSAP1Q9BXS6 441 aaKnown RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ELOVL2Q9NXB9 296 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 DEC1Q9P2X7 70 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 MBD1Q9UIS9 605 aaPredicted RBP13.83□□□□□ -0.2
LIMD1-202ENST00000440097 ITM2BQ9Y287 266 aa13.83□□□□□ -0.2
LIMD1-202ENST00000440097 RNF103-CHMP3A0A140T963 221 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 C16orf96A6NNT2 1141 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 AGAP14A8MT82 685 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 CLOCKO15516 846 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 OTCP00480 354 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ATP1B2P14415 290 aaPredicted RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 GPX3P22352 226 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 PBX2P40425 430 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 YAP1P46937 504 aaKnown RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 RPIAP49247 311 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ITGADQ13349 1161 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 PCBP2Q15366 365 aaKnown RBP eCLIP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ZNF648Q5T619 568 aaPredicted RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 SERPINA13PQ6UXR4 307 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 NPAS3Q8IXF0 933 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 BEND7Q8N7W2 519 aaPredicted RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 PCYOX1LQ8NBM8 494 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ITPKCQ96DU7 683 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 GID8Q9NWU2 228 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 BRWD1Q9NSI6 2320 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 SCN8AQ9UQD0 1980 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 TRIM64BA6NI03 449 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 SYNCRIPO60506 623 aaKnown RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 NOL3O60936 208 aaKnown RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 TIMP2P16035 220 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 SLC6A11P48066 632 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 GRIN2CQ14957 1233 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 NR6A1Q15406 480 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 SGO1Q5FBB7 561 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ERAP2Q6P179 960 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 GALNT18Q6P9A2 607 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 FUNDC1Q8IVP5 155 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 PDPRQ8NCN5 879 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ELMO1Q92556 727 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 NXPE3Q969Y0 559 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 PRM3Q9NNZ6 103 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ZDHHC4Q9NPG8 344 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 CCM2LQ9NUG4 571 aaPredicted RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 ERGIC3Q9Y282 383 aa13.82□□□□□ -0.2
LIMD1-202ENST00000440097 FAM32AQ9Y421 112 aaKnown RBP13.82□□□□□ -0.2
LIMD1-202ENST00000440097 INPP4BO15327 924 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 NFATC1O95644 943 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 ANXA5P08758 320 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 HIST1H2AGP0C0S8 130 aaPredicted RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 HIST1H2ADP20671 130 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 FSHRP23945 695 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 MAP4P27816 1152 aaKnown RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 YBX1P67809 324 aaKnown RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 ABRAXAS1Q6UWZ7 409 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 UBE2R2Q712K3 238 aaPredicted RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 OR2T11Q8NH01 316 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 TRUB1Q8WWH5 349 aaKnown RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 HIST1H2AHQ96KK5 128 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 HIST1H2AJQ99878 128 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 H2AFJQ9BTM1 129 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 TRIM54Q9BYV2 358 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 PALMDQ9NP74 551 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 ITGB1BP2Q9UKP3 347 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 TMED5Q9Y3A6 229 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 OTOL1A6NHN0 477 aaPredicted RBP13.81□□□□□ -0.2
LIMD1-202ENST00000440097 PRRT4C9JH25 899 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 OR7A17O14581 309 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 TAPBPO15533 448 aa13.81□□□□□ -0.2
LIMD1-202ENST00000440097 GSTT2P0CG29 244 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms