RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CDKN2DP55273 166 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 POLE2P56282 527 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TAS2R39P59534 338 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ACTR1AP61163 376 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 KCNAB2Q13303 367 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ZNF460Q14592 562 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TTLL9Q3SXZ7 439 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 SYTL3Q4VX76 610 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 PYCR3Q53H96 274 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TNFAIP8L3Q5GJ75 292 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ANKS6Q68DC2 871 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TMEM71Q6P5X7 295 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 ZNF549Q6P9A3 640 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TBC1D1Q86TI0 1168 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-208ENST00000437607 CACNA2D3Q8IZS8 1091 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 IL22RA1Q8N6P7 574 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 AGBL5Q8NDL9 886 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 FAM136AQ96C01 138 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 COX14Q96I36 57 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 BIRC8Q96P09 236 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 OR2M4Q96R27 311 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 GPR21Q99679 349 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 EPN3Q9H201 632 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 OR2AG1Q9H205 316 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 GPAMQ9HCL2 828 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 MKS1Q9NXB0 559 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 SLC39A1Q9NY26 324 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 PDP2Q9P2J9 529 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 PILRAQ9UKJ1 303 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TMPRSS11EQ9UL52 423 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 VWA7Q9Y334 891 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 OAS3Q9Y6K5 1087 aaKnown RBP11.84□□□□□ -0.51
PTPRF-208ENST00000437607 SPTAN1Q13813 2472 aaKnown RBP11.84□□□□□ -0.51
PTPRF-208ENST00000437607 MED13Q9UHV7 2174 aa11.84□□□□□ -0.51
PTPRF-208ENST00000437607 TRBV23OR9-2A0A075B6M9 112 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 A0A1W2PPM1 405 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 OR2AG2A6NM03 316 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 EFCAB7A8K855 629 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 FOXO6A8MYZ6 492 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 GPR89AB7ZAQ6 455 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 NKX2-8O15522 239 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 DUX1O43812 170 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 RAD1O60671 282 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 RFPL1O75677 317 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CDK14O94921 469 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 GPR89BP0CG08 455 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF37AP17032 561 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 PBLDP30039 288 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CSTF2P33240 577 aaKnown RBP eCLIP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 FASLGP48023 281 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 SEPT7Q16181 437 aaKnown RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 TSNAXIP1Q2TAA8 658 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 BCL7AQ4VC05 210 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 KHDC1Q4VXA5 237 aaKnown RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF648Q5T619 568 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 KLC3Q6P597 504 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CRTC3Q6UUV7 619 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 TIPARPQ7Z3E1 657 aaKnown RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ADGRG6Q86SQ4 1221 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 EXOC3L1Q86VI1 746 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 KRT222Q8N1A0 295 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 SFRP1Q8N474 314 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CLDN19Q8N6F1 224 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ARFGAP2Q8N6H7 521 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ACVR1CQ8NER5 493 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 FAM76AQ8TAV0 307 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 LKAAEAR1Q8TD35 194 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 SLC37A2Q8TED4 501 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ZNF514Q96K75 400 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 TRIM39Q9HCM9 518 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 SSU72Q9NP77 194 aaKnown RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 KCNK9Q9NPC2 374 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 KCNK4Q9NYG8 393 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 NKIRAS1Q9NYS0 192 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 CNOT6Q9ULM6 557 aaKnown RBP11.83□□□□□ -0.52
PTPRF-208ENST00000437607 PRSS21Q9Y6M0 314 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 ICE1Q9Y2F5 2266 aa11.83□□□□□ -0.52
PTPRF-208ENST00000437607 LOC101059948A0A1B0GTJ6 334 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 IQCF5A8MTL0 148 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ZW10O43264 779 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 DNAJC6O75061 913 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SPAG7O75391 227 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 C2P06681 752 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 GSTA1P08263 222 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 GSTM1P09488 218 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SLC35E2BP0CK96 405 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CD9P21926 228 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 RGS4P49798 205 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 CTSCP53634 463 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 PPP2R2AP63151 447 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 GPLD1P80108 840 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 GSTM4Q03013 218 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 SLC18A2Q05940 514 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 TMEM115Q12893 351 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 BOP1Q14137 746 aaKnown RBP11.82□□□□□ -0.52
PTPRF-208ENST00000437607 DCAF12Q5T6F0 453 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 OTOAQ7RTW8 1153 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 ARHGAP22Q7Z5H3 698 aa11.82□□□□□ -0.52
PTPRF-208ENST00000437607 LRRTM4Q86VH4 590 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms