RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TNFRSF25Q93038 417 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 GAL3ST3Q96A11 431 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 PNPLA2Q96AD5 504 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 CPB2Q96IY4 423 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 GHRLQ9UBU3 117 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 MYO7AQ13402 2215 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 NT5C1B-RDH14C9J2C7 533 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 POLRMTO00411 1230 aaKnown RBP7.06□□□□□ -1.28
VPS53-204ENST00000437048 CACNG1Q06432 222 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 DHCR24Q15392 516 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 HPS6Q86YV9 775 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 ING5Q8WYH8 240 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 SLC22A18Q96BI1 424 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 ZNF317Q96PQ6 595 aaPredicted RBP7.06□□□□□ -1.28
VPS53-204ENST00000437048 ZBTB26Q9HCK0 441 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 SLAMF7Q9NQ25 335 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 PNMA8BQ9ULN7 279 aaPredicted RBP7.06□□□□□ -1.28
VPS53-204ENST00000437048 BRWD1Q9NSI6 2320 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 CNTNAP2Q9UHC6 1331 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 M0R036 132 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 TOR1AO14656 332 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 PEX11AO75192 247 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 AVPR1AP37288 418 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 UBAP2LQ14157 1087 aaKnown RBP7.06□□□□□ -1.28
VPS53-204ENST00000437048 OR2L2Q8NH16 312 aa7.06□□□□□ -1.28
VPS53-204ENST00000437048 TIPRLO75663 272 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 C2P06681 752 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 MAP2K3P46734 347 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RPL38P63173 70 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 TMCO2Q7Z6W1 182 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZBTB46Q86UZ6 589 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TOP6BLQ8N6T0 577 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF614Q8N883 585 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF781Q8N8C0 355 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TRNT1Q96Q11 434 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 RGCCQ9H4X1 137 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RBM7Q9Y580 266 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 EPOP01588 193 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 MBL2P11226 248 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 RARRES1P49788 294 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SCNN1BP51168 640 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 MPPE1Q53F39 396 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 C2orf15Q8WU43 125 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 GAL3ST1Q99999 423 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TMEM260Q9NX78 707 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 EDARQ9UNE0 448 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DCCP43146 1447 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ETS2P15036 469 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TUBP50607 506 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 CLCN4P51793 760 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 HES5Q5TA89 166 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 C6orf89Q6UWU4 347 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DPY19L3Q6ZPD9 716 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PRSS48Q7RTY5 328 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 IRF2BP2Q7Z5L9 587 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SLC37A3Q8NCC5 494 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SNAPC3Q92966 411 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF419Q96HQ0 510 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 PCDHGA2Q9Y5H1 932 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PI15O43692 258 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 VARSP26640 1264 aaKnown RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 NSG1P42857 185 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DGKGP49619 791 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PROX2Q3B8N5 592 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 XKR6Q5GH73 641 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TSPYL5Q86VY4 417 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 FAM131BQ86XD5 332 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ANKFN1Q8N957 763 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SIPA1Q96FS4 1042 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 GLOD4Q9HC38 313 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TMPRSS11EQ9UL52 423 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNRF3Q9ULT6 936 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 COG5Q9UP83 839 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 AGAP14A8MT82 685 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 FLRT2O43155 660 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SAGP10523 405 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 YBX3P16989 372 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS53-204ENST00000437048 KCNJ8Q15842 424 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 AKR1C8PQ5T2L2 129 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 USP49Q70CQ1 688 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RETREG3Q86VR2 466 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DEDD2Q8WXF8 326 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RAD51AP1Q96B01 352 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SLC22A11Q9NSA0 550 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 TNFRSF10BO14763 440 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 DNASE1L1P49184 302 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 SLC12A3P55017 1021 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 IRF4Q15306 451 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ACSBG2Q5FVE4 666 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 XKR4Q5GH76 650 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF613Q6PF04 617 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ADGRG2Q8IZP9 1017 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 GPER1Q99527 375 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 FUZQ9BT04 418 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 ZNF350Q9GZX5 532 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 PAK1IP1Q9NWT1 392 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 MITFO75030 526 aaPredicted RBP7.05□□□□□ -1.28
VPS53-204ENST00000437048 NDST3O95803 873 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 RENP00797 406 aa7.05□□□□□ -1.28
VPS53-204ENST00000437048 HRH2P25021 359 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms